Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1141 ATGGACATGATCACAAGCATAGTGAGTGATAAGGCTGTGGTGATATTCAGCAAGAGCACCTGTTGCATTAGTCATTCCATCACATCACTGATTAGAAGTTTTGGGGCAAACCCCATAATCTATGAGCTTGATGAAGTTGCAAATGGGAAGCAGATTGAGAGGGCATTGCTTGAAATGGGGTGCCAGCCAAGTGTTCCAGCTGTGTTTATAGGACAGCAATTCATTGGTGGTTCTAAAACAATCATGAGCTTACACCTTCGGAATGAGTTAGTGCCACTTTTGATGAATGCCAGAGCTATATGGATTTGA 309 0.4272 MDMITSIVSDKAVVIFSKSTCCISHSITSLIRSFGANPIIYELDEVANGKQIERALLEMGCQPSVPAVFIGQQFIGGSKTIMSLHLRNELVPLLMNARAIWI* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1141 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Lja5g1141 102 Gene3D Glutaredoxin 2 100 - -
Lja5g1141 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Lja5g1141 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Lja5g1141 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Lja5g1141 102 Pfam Glutaredoxin 13 75 IPR002109 -
Lja5g1141 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Lja5g1141 102 CDD GRX_GRXh_1_2_like 12 93 - -
Lja5g1141 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Lja5g1141 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 5 102 IPR011905 -
Lja5g1141 102 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1141 Lja-Chr5 11503244 11503552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1141 1 102 Miscellaneous Gene Families AT4G15700 52.941 7.02e-41 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1141 K03676 - gmx:100811394 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0335 1 2931644 2932372 Lja5g1141 5 11503244 11503552 PCT
Lja5g1141 5 11503244 11503552 Lja1g0337 1 2944244 2944510 PCT