Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1139 ATGGACAGAGTGAAGGATTTGGCATCAAAGAGAGCTGCTGTTGTATTCACCAAGAGTTCGTGCTACATGTGTCACAGCATCACACAGCTCTTCTATGAGCTTGGAGCAAGCCCTGCAGTGCATGAGCTTGACAATGATCCCTATGGCAAGGAAATGGAGAAGGCTTTGAGGAGCTTGGGATGTAGCCCTTCGGTTCCTGCAGTTTTCATTGGTGGGAAATTCGTAGGGTCTTCAAGAGATGTGATTTCCCTCCATGTTGATGGTTCTCTGAAACAAATGCTCATGGCTGCAAGGGCCATTTGGTTTTAG 309 0.4725 MDRVKDLASKRAAVVFTKSSCYMCHSITQLFYELGASPAVHELDNDPYGKEMEKALRSLGCSPSVPAVFIGGKFVGSSRDVISLHVDGSLKQMLMAARAIWF* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1139 102 Gene3D Glutaredoxin 1 100 - -
Lja5g1139 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Lja5g1139 102 Pfam Glutaredoxin 14 75 IPR002109 -
Lja5g1139 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 101 IPR011905 -
Lja5g1139 102 CDD GRX_GRXh_1_2_like 12 93 - -
Lja5g1139 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Lja5g1139 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Lja5g1139 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Lja5g1139 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Lja5g1139 102 PANTHER GLUTAREDOXIN-C1 PROTEIN 1 101 - -
Lja5g1139 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1139 Lja-Chr5 11476356 11476840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1139 1 102 Miscellaneous Gene Families AT4G15670 47.059 2.66e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1139 K03676 - gmx:100305876 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1139 5 11476356 11476840 Lja5g1139 5 11476356 11476840 ECH
Lja1g0334 1 2928656 2928964 Lja5g1139 5 11476356 11476840 PCT
Lja5g1139 5 11476356 11476840 Lja1g0335 1 2931644 2932372 PCT