Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3195 ATGGATCCAAACGAAGTGAAATCCAAATTGACCAATTTGGCCTTCGGAAATGTAATGGCCGCTGCAGCCCGTAATTATCAGAAGGAAATTCTTGCTCAAGAGAAAGCCCAACCATCAAGTTCTGTAAATGAAGACCCTGAGTTGGAAAAATTGCATGCAGATAGGATTGCAGCTCTTAAGAAAGAAGCAGAGAAACGAGAGTCTTGGAAGAAGAAAGGTCATGGAGAATACAGGGAGATAACTGAAGGGGATTTCTTAAGTGAAGTCACTGGAAGTGCAAAAGCGATATGTCATTTCTACGTCTACCATAGGGAGTTCTATCGATGCAAGATAATGGACAAGCATTTAAAGGACCTTTCATCAAAGCATATTGACACAAAGTTCATCAAACTTGATGCAGAGAATGCGCCATTCTTTGTTGCAAAACTGCAAGTCAAGACTTTACCCTGCGTCATCCTGTTCAGACAAGGAGTTGCATTTGATAGATTGGTAGGATTTCAAGATCTGGGAGGGAAAGATGATTTTACTGCAAAAAAGCTCGAGGCTCTGCTGATAAAGAAAGAAGCAATCAACAGACGACACACCATGTCTAGACCACTATCTCCCAAGACAGCTCTGGACAAGAGTGACAAAGCTGGTTCTCTAAAGAAGAAAGCAATGAGTCTAAGGAGTTCCCTCTCTAGGAAGAGCAGGCGAAGCAGCAGCAAGGTGATGTCCGTTGAGATTGAGGATGTGCGCGATGCTGAGGATTTGAAAGCCGTTGATGAGTTCCGTCAAGCTCTTATCTTGGACGAGCTACTCCCTGAGAAGCACGATGATTATCACCAGTTGCTTAGATTCCTCAAGGCCAGGAAATTTGACACTGAGAAATCAAAGCAAATGTGGTCTGACATGCTTCAGTGGAGGAAGGAATTTGGTGCTGACACCATCGTCGAGGATTTTGACTTCAAGGAAATCGATGAAGTTGTGAAATATTATCCCCACGGACATCATGGAGTAGATAAAGATGGGCGACCTGTGTACATTGAGAATATAGGCCAAGTGGATGCGACCAAGTTGATGCAAGTCACAACCATGGATCGCTATATCAAGTACCATGTCAAGGAGTTTGAGAGGACTTTTGATTTGAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAGCACATTGATCAAAGTACCACCATTCTGGATGTGCAAGGAGTGAAGATCGATGGTGACAATTATCCAGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGGATGTTGTGGAGCACCGTAAAATCCTTCCTTGATCCAAAGACCACATCCAAGATCCATGTTCTTGGTAACAAGTATCAAAGCAAATTGCTTGAAGTCATTGATGCAAGCCAATTGCCCGAGTTTTTAGGAGGTACTTGTACATGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAAGGCCCATGGAAGGATCCAGAGTTAGTGAGGATGGTTCAGAATGGTGAGCACAAATGTTCAAGGAAGTGTGAGTCTCCTGTTGTGGAAGAAAAGAAAATCCCTGAGGAGACAACCAAAATGGGAGCAAATTTCACCTCACAATTGTCTTCAGTCTTTGGAGAGGTCCCGGCTACAAAAGCTTGCAATTACGAGGATTTTGTGCCAGCAGCTGATGAAACATTTTGGAAAAAGATCGAAGAAAATGAGCAATTTCAAATGTCAAAAGCTGCTGTACAAACCTTCAACATGGCTGATTCGTGCAAGATTCACGAAAAGGTGAATTCCCAGATTTTCACCGGCGTGATGGCATTCGTGATGGGCAACGTGACCATGGTGAGGATGACAAGGAACATGCCAAAGAAGCTCACTGACGCGAACTTCTACTCCAACTCTGTTTACTCGGGTGGGCAAAATCCTTCTGACCAGACCAACCCTTCCATTTCCGCTCAAGAGTTCATGACTGTGATGAAGCGCATGGCTAAGTTGGAAGAGAAAATGGGCAACATGAACTACAAAACTTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCCATAAGCCGTGCAGATGCTTTAGAGCAAGAACTTATGTCAACCAAGAAGGCTTTGGAGGATTCACTTGCCAAGCAAGAGGAGCTTTCGGCTTATATTGAGAAAAAGAAGAAGAAGAAGAAGTTGGCGTTTGGATATATGAAATTCGAACCCTCACAAAATTGTGTTGGGAATCCATTTTTTATATGCACAAAAGAGCTTTTTAGTTTAGAAGTAAATTTCAGATCAAGAAAAGTTTTGAAGTAA 2292 0.4302 MDPNEVKSKLTNLAFGNVMAAAARNYQKEILAQEKAQPSSSVNEDPELEKLHADRIAALKKEAEKRESWKKKGHGEYREITEGDFLSEVTGSAKAICHFYVYHREFYRCKIMDKHLKDLSSKHIDTKFIKLDAENAPFFVAKLQVKTLPCVILFRQGVAFDRLVGFQDLGGKDDFTAKKLEALLIKKEAINRRHTMSRPLSPKTALDKSDKAGSLKKKAMSLRSSLSRKSRRSSSKVMSVEIEDVRDAEDLKAVDEFRQALILDELLPEKHDDYHQLLRFLKARKFDTEKSKQMWSDMLQWRKEFGADTIVEDFDFKEIDEVVKYYPHGHHGVDKDGRPVYIENIGQVDATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVKIDGDNYPETLNRMFIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASQLPEFLGGTCTCADQGGCMRSDKGPWKDPELVRMVQNGEHKCSRKCESPVVEEKKIPEETTKMGANFTSQLSSVFGEVPATKACNYEDFVPAADETFWKKIEENEQFQMSKAAVQTFNMADSCKIHEKVNSQIFTGVMAFVMGNVTMVRMTRNMPKKLTDANFYSNSVYSGGQNPSDQTNPSISAQEFMTVMKRMAKLEEKMGNMNYKTCMPPEKEEMLNAAISRADALEQELMSTKKALEDSLAKQEELSAYIEKKKKKKKLAFGYMKFEPSQNCVGNPFFICTKELFSLEVNFRSRKVLK* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3195 763 SUPERFAMILY CRAL/TRIO N-terminal domain 247 314 IPR036273 -
Lja4g3195 763 Pfam CRAL/TRIO domain 325 469 IPR001251 -
Lja4g3195 763 MobiDBLite consensus disorder prediction 195 232 - -
Lja4g3195 763 Gene3D Glutaredoxin 67 199 - -
Lja4g3195 763 CDD Phd_like_TxnDC9 72 184 - -
Lja4g3195 763 SUPERFAMILY CRAL/TRIO domain 318 497 IPR036865 -
Lja4g3195 763 SMART CRAL_TRIO_N_2 273 298 IPR011074 -
Lja4g3195 763 SUPERFAMILY Thioredoxin-like 40 190 IPR036249 -
Lja4g3195 763 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 318 475 IPR001251 -
Lja4g3195 763 Pfam CRAL/TRIO, N-terminal domain 269 297 IPR011074 -
Lja4g3195 763 Gene3D - 217 305 - -
Lja4g3195 763 Gene3D - 306 500 IPR036865 -
Lja4g3195 763 PRINTS Cellular retinaldehyde-binding protein signature 428 447 - -
Lja4g3195 763 PRINTS Cellular retinaldehyde-binding protein signature 276 298 - -
Lja4g3195 763 PRINTS Cellular retinaldehyde-binding protein signature 461 470 - -
Lja4g3195 763 SMART sec14_4 318 472 IPR001251 -
Lja4g3195 763 Coils Coil 680 711 - -
Lja4g3195 763 CDD SEC14 319 470 IPR001251 -
Lja4g3195 763 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 197 724 - -
Lja4g3195 763 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 197 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3195 Lja-Chr4 60404441 60422719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3195 252 466 Acyl Lipid Metabolism Gene Families AT5G47730 27.197 1.38e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3195 - - lang:109350159 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0497 2 4524352 4528866 Lja4g3195 4 60404441 60422719 ECH
Lja4g3195 4 60404441 60422719 Lja4g3195 4 60404441 60422719 ECH
Lja1g2316 1 26837487 26841876 Lja4g3195 4 60404441 60422719 ECH