Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0497 ATGTCTGAACTTCTCTCTTCAGGGACCGATTCTTTTAAGAAGAAAGCAATCAATGCCTCAAACATGTTGAGGAATTCTTTGACGAGAAAGGGCAGGCGAAGCAGCAAGGTCATGTTCGTTGAGATTGAGGATGTCCACGATGCTGAGGAGCTCAAAGCTGTTGAGGAGTTCCGTCAAGCTCTTATTTCGGACGATCTTCTCCCGGCGAAACATGACGATTATCATATGATGCTCAGATTCCTCAAGGCCAGGAAATTTGAAATTGATAAATCAAAGCAAATGTGGTCTGACATGCTCAAATGGAGGAAAGAATTTGGTGCTGACACTATTGTGGAGGAGTTTGAATTCAAAGAAATAGATGAAGTGTTAAAATATTATCCCCAAGGACATCATGGAGTAGATAAAGAGGGACGACCCGTGTACATAGAGCAATTGGGACAAGTTGATGCCACCAAGCTAATGCAAGTTACAACCATGGATCGCTATATCAAATACCACGTAAAGGAGTTTGAGAAGACATTTGATTTAAAGTTTGCAGCTTGTTCGATTGCTGCGAAGAAGCACATTGATCAAAGTACGACTATCCTGGATGTGCAGGGCGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTAGTTACTCGCATTCAGAAGGTTGACGGTGACAACTACCCAGAGACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTGTGGAACACCGTAAAATCCTTCCTTGATCCTAAGACCACAGCAAAAATTAATGTCCTTGGCAACAAGTATGATACTAAATTGCTTGAAATAATTGATGCCAGTGAACTACCAGAGATTTTAGGAGGTACCTGTACATGTACTGATCAAGGAGGCTGTATGCGCTCCGATAAGGGCCCGTGGAAGGATGAAGAAATACTTAGGATGGTTCAGAATGGTGCTCACAAGTGTTCAAGAAAACCTGAGTCTCATGGGGAGGAAGAGAAACCAATTTCTGAGGACAAGACTTCCAAGTTTGACGAAAATCTCACCCCACAGGTTTCTCCAGTTTGTGATCAGGTCCCTGCTGCTAAACTTTCCAAGAACGTGGACGTAATCCCTGTGGCTATCCCCGTGGGTGTCCCGGTGGCTGTTCCAGCGGCTGACAAAAATGCATCGAAGAAAGTTGGTCAGAATGACACAACGTCCAAAGAGTTTACAACTGTGATGAAACGCATGGCTGAGTTGGAAGAGAAAATGACCACCATGAATCATCAGCCTGCTACCATGCCGCCAGAGAAGGAGGAAATGCTGAATGCTACTATAAGTCGAGCGGATGTCTTAGAGAAACAACTTATGGACACCAAGAAGGCTTTGGAGGATTCGCTTGCTAAGCAAAAGGTGCTTTCAGCTTATGTTGAGAAAAAGAAACAGAAGAAGAAGACGTTTTTCTGCTGTTAA 1449 0.4369 MSELLSSGTDSFKKKAINASNMLRNSLTRKGRRSSKVMFVEIEDVHDAEELKAVEEFRQALISDDLLPAKHDDYHMMLRFLKARKFEIDKSKQMWSDMLKWRKEFGADTIVEEFEFKEIDEVLKYYPQGHHGVDKEGRPVYIEQLGQVDATKLMQVTTMDRYIKYHVKEFEKTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELVTRIQKVDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKYDTKLLEIIDASELPEILGGTCTCTDQGGCMRSDKGPWKDEEILRMVQNGAHKCSRKPESHGEEEKPISEDKTSKFDENLTPQVSPVCDQVPAAKLSKNVDVIPVAIPVGVPVAVPAADKNASKKVGQNDTTSKEFTTVMKRMAELEEKMTTMNHQPATMPPEKEEMLNATISRADVLEKQLMDTKKALEDSLAKQKVLSAYVEKKKQKKKTFFCC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0497 482 SMART CRAL_TRIO_N_2 73 98 IPR011074 -
Lja2g0497 482 Pfam CRAL/TRIO, N-terminal domain 70 97 IPR011074 -
Lja2g0497 482 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 386 478 - -
Lja2g0497 482 MobiDBLite consensus disorder prediction 317 345 - -
Lja2g0497 482 CDD SEC14 119 287 IPR001251 -
Lja2g0497 482 MobiDBLite consensus disorder prediction 317 343 - -
Lja2g0497 482 SUPERFAMILY CRAL/TRIO N-terminal domain 47 113 IPR036273 -
Lja2g0497 482 Gene3D - 41 105 - -
Lja2g0497 482 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 386 478 - -
Lja2g0497 482 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 118 292 IPR001251 -
Lja2g0497 482 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 10 366 - -
Lja2g0497 482 Coils Coil 441 461 - -
Lja2g0497 482 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 10 366 - -
Lja2g0497 482 PRINTS Cellular retinaldehyde-binding protein signature 76 98 - -
Lja2g0497 482 PRINTS Cellular retinaldehyde-binding protein signature 278 287 - -
Lja2g0497 482 PRINTS Cellular retinaldehyde-binding protein signature 245 264 - -
Lja2g0497 482 SMART sec14_4 118 289 IPR001251 -
Lja2g0497 482 SUPERFAMILY CRAL/TRIO domain 118 313 IPR036865 -
Lja2g0497 482 Pfam CRAL/TRIO domain 124 286 IPR001251 -
Lja2g0497 482 Gene3D - 106 318 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0497 Lja-Chr2 4524352 4528866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0497 79 283 Acyl Lipid Metabolism Gene Families AT5G47730 28.502 2.24e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0497 - - gmx:100527533 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0497 2 4524352 4528866 Lja4g3195 4 60404441 60422719 ECH
Lja2g0497 2 4524352 4528866 Lja2g0497 2 4524352 4528866 ECH
Lja1g2316 1 26837487 26841876 Lja2g0497 2 4524352 4528866 ECH