Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2316 ATGTGTGACCCTATGTCCGGACCTATGGACCGAACCGTGAAAATTGGACCTGAAATTGAATATTCTGAGGATGAAAGGAAGACAAAGCTCGGATCCCTTAAGAAGGTGGCAATCAGTGCCTCATCTAAGTTCAGGCATTCCTTTACCAAGAAAGGAAGGAGGCACAGCAGGGTCATGTCTGTTTCGATTGCGGACGAACTCGACACAGAAGAGTTGCAGGCAGTTGATGCTTTTCGCCAAACACTTATATTGGAAGAGCTCTTACCTTCAAAGCATGATGATCATCACATGATGCTAAGATTCTTGAGAGCAAGGAAGTTTGATATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGACGGAATTTGGTGCTGACACTATCATGGAGGATTTTGAATTCAAGGAAATAGATGAAGTTCTGAAGTACTACCCACATGGGCATCATGGAGTTGATAAGGAAGGACGACCTGTTTATATTGAAAAACTGGGTCAAGTTGACTCAACCAAGTTGATGCAAGTAACAACAATGGAACGTTACCTCAAGTACCATGTAAGAGAGTTTGAGAGGACCTTTAATGTTAAGTTGCCAGCATGTTCAATCGCAGCTAAGAAGCACATTGACCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCAGCAAGGGATCTCCTCCAGAGGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCCCTGAACCGTATGTTTATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAATACTGTTAAGTCATTCCTAGACCCCAAGACCACTTCAAAAATCCATGTTCTAGGTAACAAATACCAGAGCAAGTTGCTTGAAATGATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGCACTTGCACTTGTGCAGATAAAGGTGGTTGTATGCATTCTGACAAGGGGCCATGGAATGATCCAGATATCTTGAAGATGGTTCAAAATGGCGAGGGAAAATGCAGCAGGAAAACCTTATCCATGATTGAGGAGAAAACAATCACAGAAGATGGAACAGCAAATCAAAAGTATTTTTCTTTTTTGCCTTCAATGTTAAGGGGTTCAAAGATGCATTTCCACAATCACACGACTGTGTATCAGTATGATGCCTTTGTCCCAGTACTTGACAAGCCAGTTGATTCATCTTGGAAGAAAGTAGCACAAAATGATAAATTTGCACTTTCTAAAGATTGTTTCCCCAACAACAATAACAAGAACGCTAAAGTGATTAGCCATCAACTTGTCGGAGGAATCATGACCCTTGTTATGGGCATTGTGACCATTATCCGCATGGCAAGGAACATGCCTAGGAGAATCACTGAAGCAGCACTCTATGGTGGCTCAGAATGCTATGCTGGTGGCAATATGATGAAAGCGTGTATTTCAAGCAATGACTACATGGCCATGATTAAGCGCATGGCTGAACTAGAAGAGAGAGTCACTGTTCTCGCCGTTAGACCTGCCATGCCACCAGAACAAGAGGAGTTGCTCAACAATGCTCTGAACAGAGTCAGTACTGTGGAACAAGAGTTGGCTGCAACCAAAAAGGCACTTGATGATGCCCTTGCTCGCCAAGTAGAACTTCAAGACCAAATTGACAAGAAGAAAAAGAAGAAGTTGAAAATTACATTTTCTTGCTTTGGAGATCATTGGTCTCAAATCCATTGGGAGCAAGACTAA 1740 0.4236 MCDPMSGPMDRTVKIGPEIEYSEDERKTKLGSLKKVAISASSKFRHSFTKKGRRHSRVMSVSIADELDTEELQAVDAFRQTLILEELLPSKHDDHHMMLRFLRARKFDIEKTKQMWTDMLKWRTEFGADTIMEDFEFKEIDEVLKYYPHGHHGVDKEGRPVYIEKLGQVDSTKLMQVTTMERYLKYHVREFERTFNVKLPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDASELPEFLGGTCTCADKGGCMHSDKGPWNDPDILKMVQNGEGKCSRKTLSMIEEKTITEDGTANQKYFSFLPSMLRGSKMHFHNHTTVYQYDAFVPVLDKPVDSSWKKVAQNDKFALSKDCFPNNNNKNAKVISHQLVGGIMTLVMGIVTIIRMARNMPRRITEAALYGGSECYAGGNMMKACISSNDYMAMIKRMAELEERVTVLAVRPAMPPEQEELLNNALNRVSTVEQELAATKKALDDALARQVELQDQIDKKKKKKLKITFSCFGDHWSQIHWEQD* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2316 579 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 559 - -
Lja1g2316 579 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Lja1g2316 579 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Lja1g2316 579 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Lja1g2316 579 SUPERFAMILY CRAL/TRIO N-terminal domain 64 135 IPR036273 -
Lja1g2316 579 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Lja1g2316 579 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Lja1g2316 579 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Lja1g2316 579 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Lja1g2316 579 SMART sec14_4 139 310 IPR001251 -
Lja1g2316 579 Gene3D - 127 338 IPR036865 -
Lja1g2316 579 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 559 - -
Lja1g2316 579 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
Lja1g2316 579 CDD SEC14 140 308 IPR001251 -
Lja1g2316 579 Gene3D - 37 126 - -
Lja1g2316 579 Coils Coil 517 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2316 Lja-Chr1 26837487 26841876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2316 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 9.63e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2316 - - gmx:100798374 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2316 1 26837487 26841876 Lja1g2316 1 26837487 26841876 ECH
Lja1g2316 1 26837487 26841876 Lja2g0497 2 4524352 4528866 ECH
Lja1g2316 1 26837487 26841876 Lja4g3195 4 60404441 60422719 ECH