Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0559 ATGGACCTGTTCTCACACCACCGACATTCTTTTCAACCCTTCTGTGCCTTCATCATCTTCATCCTTTTCAAAGGGGTTTCAGTTTCAGGGGCTACATTTAGCTTCGTGAACAAGTGCGATTTCACAGTGTGGCCAGGGATTTTCGGAAAACCAGAAATCGGAAGCACAGGCTTTGAGCTAACAAAGGGAAGTTCCAAGAGCTTCCAAGCTCCAACCGGTTGGTCCGGCAGATTCTGGGCAAGAACCGGTTGCCAATTCGACAGCTCCGGCCGCGGAACCTGCGCCACCGCCGATTGCGGCTCCGGTGAGATCAACTGCAACGGCGCCACCGCCTTACCGCCAGCGACTCTCGCCGAGTTCACACTCGGCACAGGCTCCATGGACTTCTACGACGTGAGCCTCGTCGACGGCTACAATCTCCCAATGATGGTGGTCGCCAGCGGCGGCTCCGGCTCGTGCTCCGCCACGGGGTGCGGGGCGGACCTCAACAGAAAGTGTCCGTCGGAGCTGAGGGTGGATGGCGGTGGCGCGTGCCAGAGTGCTTGCGGCGCGTTTGGGAAACCAGAGTATTGCTGTAATGGAGCTTTCAGCAACCCTTCGACGTGTAAACCTTCTGTGTACTCAGAAATGTTCAAGTCTGCATGTCCCAAATCTTATAGCTACGCCTATGATGATGCCACCAGCACTTTCACATGTTCTGGTGCTGATTATACAATCACATTTTGCCCCTCTTCTTCTCCAATTCTAAAGTCTTCAACGGATTCTCCACCAAAGGCAATTGATTCGGATTCGGGTTCGAGTTCAAGTTCGGGTTCAGTAGGTTCAGGGTCAAGTTCAGAGCAATCTGCAATAGCTTCAACTTCATGGATGGCTGATATGGCTACAGCCACAGGGGGTTCTTCAACGAGAAGCAGGGATCTTTGTTGGTGGATGTTACTTTCATTCTTTATTGTTTATCGTCTGGTGGCTAATTAG 975 0.5231 MDLFSHHRHSFQPFCAFIIFILFKGVSVSGATFSFVNKCDFTVWPGIFGKPEIGSTGFELTKGSSKSFQAPTGWSGRFWARTGCQFDSSGRGTCATADCGSGEINCNGATALPPATLAEFTLGTGSMDFYDVSLVDGYNLPMMVVASGGSGSCSATGCGADLNRKCPSELRVDGGGACQSACGAFGKPEYCCNGAFSNPSTCKPSVYSEMFKSACPKSYSYAYDDATSTFTCSGADYTITFCPSSSPILKSSTDSPPKAIDSDSGSSSSSGSVGSGSSSEQSAIASTSWMADMATATGGSSTRSRDLCWWMLLSFFIVYRLVAN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0559 324 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 8 267 - -
Lja2g0559 324 MobiDBLite consensus disorder prediction 249 280 - -
Lja2g0559 324 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Lja2g0559 324 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Lja2g0559 324 CDD TLP-PA 32 242 - -
Lja2g0559 324 Gene3D Thaumatin 31 243 IPR037176 -
Lja2g0559 324 PANTHER OS03G0233200 PROTEIN 8 267 IPR001938 -
Lja2g0559 324 ProSiteProfiles Thaumatin family profile. 30 243 IPR001938 -
Lja2g0559 324 Pfam Thaumatin family 37 243 IPR001938 -
Lja2g0559 324 SUPERFAMILY Osmotin, thaumatin-like protein 31 244 IPR037176 -
Lja2g0559 324 SMART tha2 33 243 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0559 Lja-Chr2 5067689 5069513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0559 14 269 Receptor kinase-like Gene Family AT5G38280 44.853 3.48e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0559 - - lja:Lj2g3v1693180.1 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0559 2 5067689 5069513 Lja2g0559 2 5067689 5069513 ECH
Lja2g0559 2 5067689 5069513 Lja4g3127 4 59231286 59233477 ECH