Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1960 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACGTAAATTTCAAGAAGAGGGAACAATGCCAAAGTTGTGCATACCCCAAATATGGAGGCCCTGACCCAGCAACCTACAGATACAACAGGACTGAAACTTTGGCAGGGGACTGGTATTGCTCCGCTATGAACTGTGGAGCTCACAACTATGCAAGCAGATCAAACTGCTATAGATGTGGTACAATGAGGGATGATTATTCTTCTGGATATGGGGGGAACATGGCAGGCTCTGGAGGATATGGATCTGATTGCAGTTTCCCACCTGGATGGAAGAGTGGAGATTGGATTTGCCCTAGAATTGGCTGTGGAGTGCATAATTATGCTAGCAGGGCAGAATGCTTCAAGTGCAAAATGCCAAGGGACTTTGGTGGGGAAGATTGA 423 0.4775 MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCGAHNYASRSNCYRCGTMRDDYSSGYGGNMAGSGGYGSDCSFPPGWKSGDWICPRIGCGVHNYASRAECFKCKMPRDFGGED* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1960 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Lja4g1960 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Lja4g1960 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Lja4g1960 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Lja4g1960 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Lja4g1960 140 SUPERFAMILY Ran binding protein zinc finger-like 102 136 IPR036443 -
Lja4g1960 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Lja4g1960 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Lja4g1960 140 SMART zf_4 6 30 IPR001876 -
Lja4g1960 140 SMART zf_4 50 76 IPR001876 -
Lja4g1960 140 SMART zf_4 107 133 IPR001876 -
Lja4g1960 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Lja4g1960 140 Pfam Zn-finger in Ran binding protein and others 105 133 IPR001876 -
Lja4g1960 140 Pfam Zn-finger in Ran binding protein and others 49 76 IPR001876 -
Lja4g1960 140 Gene3D - 101 136 - -
Lja4g1960 140 Gene3D - 1 35 - -
Lja4g1960 140 Gene3D - 42 79 - -
Lja4g1960 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Lja4g1960 140 SUPERFAMILY Ran binding protein zinc finger-like 45 79 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1960 Lja-Chr4 20064758 20067200 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1960 - - gmx:100792208 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1960 4 20064758 20067200 Lja3g2124 3 24848386 24850177 ECH
Lja4g1960 4 20064758 20067200 Lja1g3864 1 48745944 48747611 ECH
Lja4g1960 4 20064758 20067200 Lja4g1960 4 20064758 20067200 ECH