Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3864 ATGAGCCGACCAGGAGATTGGAACTGCAGGACATGCAGCCACCTCAACTTCCAAAGAAGAGAATCGTGCCAACGATGTGGGGAGCCAAGAGCTGGAGCAGGAGGTGACTACGGTGGCGCCTTTGGCAGTGGAGGAGGTGACTACAGTGGCGGCTTTGGCGGTGGCAGAGGCGGCTCCTCCTCTTTTGGCTTCACCACTGGCCCTGATGTCCGCCCTGGTGACTGGTACTGCAATGTGGGAAACTGTGGAGCTCACAACTTTGCTAGCCGCTCTGGCTGCTTCAAGTGCGGTGCACCCAAGGAGGACTCCTCTTCTGGTGGATATGACATGATGAGATCCTACGGTGGTGGTGGTGGCAGCTTTGGCGGCACCTCCGCTCGCCCCGGCTGGAAATCCGGTGATTGGATATGCTCCAGGTCTGGGTGCAACGAGCATAACTTTGCTAATAGAATGGAGTGCTACCGATGCAGTGCACCAAGAGACTCTAATGGCGGCAGGTCTCCATATTGA 510 0.5686 MSRPGDWNCRTCSHLNFQRRESCQRCGEPRAGAGGDYGGAFGSGGGDYSGGFGGGRGGSSSFGFTTGPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEDSSSGGYDMMRSYGGGGGSFGGTSARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSNGGRSPY* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3864 169 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lja1g3864 169 PANTHER OS02G0203700 PROTEIN 1 163 - -
Lja1g3864 169 ProSitePatterns Zinc finger RanBP2-type signature. 75 96 IPR001876 -
Lja1g3864 169 SUPERFAMILY Ran binding protein zinc finger-like 126 163 IPR036443 -
Lja1g3864 169 SUPERFAMILY Ran binding protein zinc finger-like 67 103 IPR036443 -
Lja1g3864 169 ProSiteProfiles Zinc finger RanBP2 type profile. 131 162 IPR001876 -
Lja1g3864 169 Gene3D - 67 103 - -
Lja1g3864 169 Gene3D - 125 163 - -
Lja1g3864 169 Gene3D - 2 32 - -
Lja1g3864 169 PANTHER ZINC FINGER PROTEIN 1 163 - -
Lja1g3864 169 SMART zf_4 133 159 IPR001876 -
Lja1g3864 169 SMART zf_4 5 29 IPR001876 -
Lja1g3864 169 SMART zf_4 73 99 IPR001876 -
Lja1g3864 169 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Lja1g3864 169 Pfam Zn-finger in Ran binding protein and others 3 29 IPR001876 -
Lja1g3864 169 Pfam Zn-finger in Ran binding protein and others 71 102 IPR001876 -
Lja1g3864 169 Pfam Zn-finger in Ran binding protein and others 131 160 IPR001876 -
Lja1g3864 169 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lja1g3864 169 ProSitePatterns Zinc finger RanBP2-type signature. 135 156 IPR001876 -
Lja1g3864 169 ProSiteProfiles Zinc finger RanBP2 type profile. 71 102 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3864 Lja-Chr1 48745944 48747611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3864 - - gmx:100811107 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3864 1 48745944 48747611 Lja1g3864 1 48745944 48747611 ECH
Lja4g1960 4 20064758 20067200 Lja1g3864 1 48745944 48747611 ECH