Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2124 ATGAGCAGGCCCGGAGATTGGAACTGCAGGTCCTGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCGATGTGGGGACTCCAAATATGGAGACAGGATCGATTTTGGGGCATTTGGAGGTGGAATTAGAGGAGGGTCTTCATTTGGGTTGAGCGGTTCAGATGTTCGCCCAGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGCTTCAAATGTGGTGCATTCAAGGATGACTTAGTTGGAGGCTTCAGCAGCGACATCTTGCGCTCAAGAGGCGGCTTTGGTGGCGGCGGCGGAGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGATCAGGATGCAATGAGCACAATTTTGCTAGCAGAATGGAATGTTTTAAATGCAGCGCCCCTAGGGACACTTACCAGATATGA 453 0.5166 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRIDFGAFGGGIRGGSSFGLSGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLVGGFSSDILRSRGGFGGGGGGRPGWKSGDWICSRSGCNEHNFASRMECFKCSAPRDTYQI* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2124 150 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Lja3g2124 150 ProSiteProfiles Zinc finger RanBP2 type profile. 58 89 IPR001876 -
Lja3g2124 150 Gene3D - 2 32 - -
Lja3g2124 150 Gene3D - 53 89 - -
Lja3g2124 150 Gene3D - 112 148 - -
Lja3g2124 150 ProSitePatterns Zinc finger RanBP2-type signature. 62 83 IPR001876 -
Lja3g2124 150 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Lja3g2124 150 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Lja3g2124 150 SMART zf_4 5 29 IPR001876 -
Lja3g2124 150 SMART zf_4 118 144 IPR001876 -
Lja3g2124 150 SMART zf_4 60 86 IPR001876 -
Lja3g2124 150 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Lja3g2124 150 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Lja3g2124 150 Pfam Zn-finger in Ran binding protein and others 58 85 IPR001876 -
Lja3g2124 150 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Lja3g2124 150 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Lja3g2124 150 SUPERFAMILY Ran binding protein zinc finger-like 108 147 IPR036443 -
Lja3g2124 150 SUPERFAMILY Ran binding protein zinc finger-like 52 88 IPR036443 -
Lja3g2124 150 PANTHER ZINC FINGER PROTEIN 1 147 - -
Lja3g2124 150 PANTHER OS02G0203700 PROTEIN 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2124 Lja-Chr3 24848386 24850177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2124 - - gmx:100527535 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1960 4 20064758 20067200 Lja3g2124 3 24848386 24850177 ECH
Lja3g2124 3 24848386 24850177 Lja3g2124 3 24848386 24850177 ECH