Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1640 ATGAGTGAACATTCATTCCCTGTTTCTCTGAGTCCAAAACCAATTCCTCACAATGCGGATATGTCTATCTCTGTGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGACAAAAGGCCGGACTTGAAATATGGCGTATTGAGAATTTTAATCCGGTTCCCATTCCTCAGTCTTCTTATGGAAAGTTTTTCAACGGGGACTCATATGTGATTCTGAAGACAACCGCTTCAAAAAGTGGTGCTCTGCGCCATGATCTCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCTATCAAAACAGTTGAGTTGGATGCAGCTCTAGGAGGACGTGCTGTTCAGTATCGCGAAGTACAGGGTCGTGAGACGGATAAGTTCCTCTCATATTTCAAACCATGTATTATACCACAAGAAGGTGGAGCTGCCTCAGGTTTTAAACATGTTGAGGCTGAAGAACACAAGGCACGATTGTTTGTATGCAAAGGGAAACATGTTGTGCATGTTAAAGAGGTTCCTGCTGCTCGATCTTCACTCAACCATGATGATGTTTTTATCCTGGATACTGAGTCAAAAATCTTCCAATTTAATGGTTCTAACTCATCTATTCAAGAAAGGGCTAAAGCACTGGAAGTTGTCCAATTTATTAAGGACACCTACCATGATGGGAAATGCGATGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATTCTGAAGCTGGAGAGTTCTGGGGTTTCTTTGGGGGCTTTGCTCCCCTTCCACGGAAAACAGTCAGTGATGATGATAAGCTACCTGATTCTCATCCTCCAAAGCTGCTTTGTGTTGAAAAGGGGAAGGCAGAACCCATTGAAACTGATTCTTTGACAAAGGAGTTACTGGACACAAACAAATGCTATATTCTAGATTGTGGGTTGGAAGTGTTTGCGTGGATCGGAAGAAACACACCACTCGATGAAAGAAAAAGTGCAAGTAGAGCTGCAGATGAGTTACTCAGTGACACTGATCGACCAAAATCCCAAATAATTCGTGTAATTGAAGGATTTGAAACCGTCATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACCAATGCAACAATGCCGGAAGAAGGTCGTGGCAAGGTCGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGCCTCGTGAAAGCTGATCCAGTAAAAGAAGAACCTCAACCCTTCATAGATTGCACAGGCCATTTGCAGGTTTGGCGTGTGAATGGTCAGGAAAAGATTCTTCTTGCAGCCAATGATCAGTCAAAATTGTATAGTGGAGATTGCTACATTTTTCAGTATTCATATCCTGGAGAAGATAGGGAGGAGTATCTTATAGGAACATGGATTGGAAAGAGTAGTGTCGAGGAAGAAAGACTTTCAGCTATTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTATTCCATCCCAGGCTCGTATTTATGAAGGAAGTGAACCAATTCAATTTAATGCTATCCTCCAAAGCTTTATTGTTTTTAAGGGTGGACTTAGTGAGGGATACAAGAATTACATTGCGGAGAAGGAAATTCCAGATGATACATACAGTGAGGACGGTGTTGCATTATTCCGCATCCAGGGATCTGGACCAGACAATATGCAAGCTATACAAGTGGAACCAGTTGCTTCCTCCTTGAATTCCTCTAATTGTTTCATACTTCATGATGGATCCACGGTTTTTACTTGGTCTGGAAGTTTTACAACTTCAGATGACCTGGAACTTGTTGAGAGAATGCTGGATTTGATTAAGCCAGAGTTACAAAGCAAGCCTCAAAAGGAAGGTGCAGAATCTGAACAATTTTGGGATTTGTTAAGAGGAAAAACTGAATATCCCAGTCAAAAGATTGCGAGGGACGCTGAAAATGATCCTCATCTATTTTCTTGCAACTACTCAGGAGGAAACTTGAAGGCGACAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTTCGTCTTGGATTGTCACTCTGAAATCTTTGTGTGGGTTGGCCAGGAGGTTGACCCCAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTTGAGGGTGATTTTCTTCTAGAAAAATTATCTCGTGTAGCTCCAATATATGTTGTCATGGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGATTCTGCCAAATCTGCAATGCTGGGAAACTCATTTCAAAGAAAACTCACAATCGTGAAAAATGGGGGCACTCCACCTTTGGTTAAACCCAAACGAAGAGCATCCGTATCTCTTGGTGGAAGGTCTAGTAGTGTACCAGATAAATCTCAGCGTTCCCGCAGCATGTCTGTTAGTCCTGATCGTGTTCGTGTGAGAGGAAGATCTCCAGCTTTTAATGCACTGGCAGCTAATTTCGAGAACACAAATGCTAGGAACCTTTCAACTCCACCTCCAATTATTAGGAAATTGTACCCAAAATCTATGAGTCCAGATACAGCAAAATTGGGACCTAAGTCTTCAGCCATAGCTAGCATTAGTTCTACTTTTGAACCACCTTCAGCACGAGAAAAATTGATTCCTCGGTCACTTAAAGCGAGTTCAGGTGCCTCCAAATCAGACCCGGAGATAAGTGAAAAGGATGATTCTATGAGCAGCACAACAGAATCTCCTAATGTACAGGGAGATGTGAAAGAGGGTGAAGCTGAAGATGATGAAGGTCTCCCAGTTTACCCATATGAAAGTGTTAACACAGATTCTACAGATCCTGCAACAGACATTGACGTCACTAAACGAGAGGCTTATCTGTCACCTGAGGAGTTTCAAAAGCACTTAGGGATGACTAAGAAAGAATTTAACAAATTGCCAAAATGGAAACAGAACAAACTCAAAATGGCTGTTAATTTAGAAAATAGAGATTTTTCTTCGCAATGGTTTGATATTTACGGTTCTTCCTTCCTTGAGAGCTGCTTGGTACTAATTGTATAG 3018 0.4198 MSEHSFPVSLSPKPIPHNADMSISVRDLDPAFKGAGQKAGLEIWRIENFNPVPIPQSSYGKFFNGDSYVILKTTASKSGALRHDLHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGRETDKFLSYFKPCIIPQEGGAASGFKHVEAEEHKARLFVCKGKHVVHVKEVPAARSSLNHDDVFILDTESKIFQFNGSNSSIQERAKALEVVQFIKDTYHDGKCDVAAVEDGKLMADSEAGEFWGFFGGFAPLPRKTVSDDDKLPDSHPPKLLCVEKGKAEPIETDSLTKELLDTNKCYILDCGLEVFAWIGRNTPLDERKSASRAADELLSDTDRPKSQIIRVIEGFETVMFRSKFDSWPQTTNATMPEEGRGKVAALLKRQGLDVKGLVKADPVKEEPQPFIDCTGHLQVWRVNGQEKILLAANDQSKLYSGDCYIFQYSYPGEDREEYLIGTWIGKSSVEEERLSAISLASKMVESMKFIPSQARIYEGSEPIQFNAILQSFIVFKGGLSEGYKNYIAEKEIPDDTYSEDGVALFRIQGSGPDNMQAIQVEPVASSLNSSNCFILHDGSTVFTWSGSFTTSDDLELVERMLDLIKPELQSKPQKEGAESEQFWDLLRGKTEYPSQKIARDAENDPHLFSCNYSGGNLKATEIYNFSQDDLMTEDIFVLDCHSEIFVWVGQEVDPKSRMQALTIGEKFLEGDFLLEKLSRVAPIYVVMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLTIVKNGGTPPLVKPKRRASVSLGGRSSSVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNARNLSTPPPIIRKLYPKSMSPDTAKLGPKSSAIASISSTFEPPSAREKLIPRSLKASSGASKSDPEISEKDDSMSSTTESPNVQGDVKEGEAEDDEGLPVYPYESVNTDSTDPATDIDVTKREAYLSPEEFQKHLGMTKKEFNKLPKWKQNKLKMAVNLENRDFSSQWFDIYGSSFLESCLVLIV* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1640 1005 MobiDBLite consensus disorder prediction 857 935 - -
Lja4g1640 1005 Pfam Villin headpiece domain 945 979 IPR003128 GO:0003779|GO:0007010
Lja4g1640 1005 SUPERFAMILY Actin depolymerizing proteins 402 548 - -
Lja4g1640 1005 Gene3D Severin 633 753 IPR029006 -
Lja4g1640 1005 CDD gelsolin_S3_like 274 363 - -
Lja4g1640 1005 SUPERFAMILY Actin depolymerizing proteins 615 737 - -
Lja4g1640 1005 PRINTS Gelsolin family signature 693 712 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 456 474 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 489 509 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 343 364 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 664 686 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 612 631 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 431 447 IPR007122 GO:0051015
Lja4g1640 1005 PRINTS Gelsolin family signature 552 572 IPR007122 GO:0051015
Lja4g1640 1005 Gene3D Severin 406 541 IPR029006 -
Lja4g1640 1005 ProSiteProfiles Headpiece (HP) domain profile. 915 980 IPR003128 GO:0003779|GO:0007010
Lja4g1640 1005 CDD gelsolin_S1_like 32 144 - -
Lja4g1640 1005 SMART VHP_1 945 980 IPR003128 GO:0003779|GO:0007010
Lja4g1640 1005 CDD gelsolin_S2_like 158 237 - -
Lja4g1640 1005 SUPERFAMILY VHP, Villin headpiece domain 907 979 IPR036886 GO:0003779|GO:0007010
Lja4g1640 1005 SUPERFAMILY Actin depolymerizing proteins 149 263 - -
Lja4g1640 1005 CDD gelsolin_S6_like 641 740 - -
Lja4g1640 1005 Pfam Gelsolin repeat 289 357 IPR007123 -
Lja4g1640 1005 Pfam Gelsolin repeat 170 236 IPR007123 -
Lja4g1640 1005 Pfam Gelsolin repeat 659 732 IPR007123 -
Lja4g1640 1005 Pfam Gelsolin repeat 48 131 IPR007123 -
Lja4g1640 1005 Gene3D Severin 542 632 IPR029006 -
Lja4g1640 1005 PANTHER VILLIN-4 21 979 - -
Lja4g1640 1005 SMART VILL_6 642 739 IPR007122 GO:0051015
Lja4g1640 1005 SMART VILL_6 157 254 IPR007122 GO:0051015
Lja4g1640 1005 SMART VILL_6 539 626 IPR007122 GO:0051015
Lja4g1640 1005 SMART VILL_6 274 364 IPR007122 GO:0051015
Lja4g1640 1005 SMART VILL_6 412 509 IPR007122 GO:0051015
Lja4g1640 1005 SMART VILL_6 39 137 IPR007122 GO:0051015
Lja4g1640 1005 Gene3D Severin 153 266 IPR029006 -
Lja4g1640 1005 MobiDBLite consensus disorder prediction 775 795 - -
Lja4g1640 1005 MobiDBLite consensus disorder prediction 761 802 - -
Lja4g1640 1005 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 274 447 IPR036180 -
Lja4g1640 1005 CDD gelsolin_S5_like 537 628 - -
Lja4g1640 1005 SUPERFAMILY Actin depolymerizing proteins 29 167 - -
Lja4g1640 1005 SUPERFAMILY Actin depolymerizing proteins 531 633 - -
Lja4g1640 1005 PANTHER VILLIN 21 979 IPR007122 GO:0051015
Lja4g1640 1005 Gene3D Severin 26 152 IPR029006 -
Lja4g1640 1005 CDD gelsolin_S4_like 406 502 - -
Lja4g1640 1005 Gene3D Severin 267 377 IPR029006 -
Lja4g1640 1005 Gene3D Villin headpiece domain 918 979 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1640 Lja-Chr4 15418926 15427970 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1640 - - gmx:100807762 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1640 4 15418926 15427970 Lja6g1844 6 45781727 45784400 PCT
Lja6g2124 6 50146728 50159178 Lja4g1640 4 15418926 15427970 PCT