Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2124 ATGGCGGTTTCCATGAAAGATTTGGATCCAGCTTTCCAGGGAGCTGGGCAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAATTCCTGTCCCAAAGTCCTCTTACGGCAAGTTCTTCACTGGGGACTCCTATGTGATCTTAAAGACAACGGCATCAAAAAATGGCGCTCTGCGCCATGACATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCAGGTGTTGCAGCTATCAAGACAGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCAGTTCAGTATCGTGAAGTACAAGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAGCCCTGTATTATACCTCAAGAAGGTGGAGTTGCTTCTGGTTTTAAACACGCTGAGGCTGAAAAGCATAAAACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTACATGTTAAAGAGGTTCCATTTGCTCGATCTTCACTCAACCATGATGATATTTTTGTTCTCGATACTGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAGAGGGCTAAAGCTTTGGAAGTAGTACAATACATTAAGGATACTTACCATGAAGGGAAATGTGAGGTAGCTGCTATTGAGGATGGAAAGTTGATGGCTGATTCTGAAACTGGCGAATTTTGGGGTTTCTTTGGGGGATTTGCTCCTCTTCCCCGAAAAACAGCCAGTGATGATGATAAGCCTGCTGATTCTCACCCTCCAAAACTGCTTTGTATTGAGAAGGGACAAGCAGAAAATGTTGAGACTGATTCTTTGAAAAGGGAATTGCTAGACACGAATAAGTGCTATATTCTGGATTGTGGGTTGGAAGTGTTTGTCTGGATGGGAAGAAACACCTCTCTAGAGGAAAGGAAAAGTGCAAGTGGAGCTGCTGATGAGTTAGTCAGTGGAATTGATAAACTGAAACCCCAAATAATTCGCGTAATTGAAGGATTTGAAACAGTGACGTTCAGGTCCAAGTTTGATTCTTGGCCTCAGACCACTGATGTAACAGTATCTGAAGATGGCCGTGGCAAGGTGGCAGCACTTCTAAAACGTCAAGGAGTAAATGTCAAGGGTCTGTTGAAAGCTGATCCAGTCAAAGAAGAACCTCAAGCTTACATCGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAACGGTCAGGAAAAGATTCTTCTTCCTGCTTCTAATCAGTCGAAGTTTTATAGTGGAGATTGCTACATCTTTCAGTATTCATATCCTGGAGAAGATAAGGAAGATTGTCTTATTGGAACGTGGATTGGAAAGAAGAGTGTTGAGGAAGATAGAGCTTCAGCTAATTCACTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCAGGCTTCCCAGGCTCGTATATTTGAAGGCAATGAACCAATTCATTTTTATACTATCCTCCAAACCTTCATTGTTTTTAAGGGTGGCCTTAGTGATGGATACAAGACATACACTGCGGAAAAGGAAATTCCAGATGAGACATACAATGTGGATGGTGTTGCATTGTTCCGCATCCAGGGCTCTGGACCAGACAATATGCAAGCTATTCAAGTTGAACCGGTTGCGTCTTCCTTGAACTCCTCTTATTGTTACATACTTCATAATGGGCCTGCTGTCTTTACTTGGTCTGGAAGTGCTACAAGTATGGAAGACCAGGAACTTGTAGAGAGGATGATGGATTTGATAAAGCCAAATTTACAAACCAAACCACAAAGGGAAGGTACAGAATCTGAACAATTTTGGGATTTGTTAGGAGGAAAATCTGAATATCCTAGTCAAAAGATTAGCAGGGAGGCTGAAAGTGATCCTCGCCTATTTTCTTGCAACTTCTCAAAAGGAAATTTAAAGGTGACAGAGGTTTACAACTTCTCCCAGGACGATCTGATGACAGAAGACATTTTCATCTTGGATTGTCACACAGAAATATTTGTCTGGGTTGGCCAGCAGGTTGACCCCAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTATTGAGCATGATTTTCTTCTTGAGAATTTATCTCACGTGGCTCCGATCTATATTGCCATGGAAGGGAGTGAACCACCTTTTTTCACACGTTTCTTCAAATGGGACTCTGCAAAATCTGCAATGCTGGGAGACTCATTTCAGAGAAAGCTTAAAATCGTGAAAAATGGGGGTACTCCACTTATGGATAAACCCAAACGGCGAACATCTAGCGCTTATGGAGGAAGGTCTAGTAGTGTCCCAGATAAATCCCAGCGTTCCTCCCGCAGCATGTCTGTTAGTCCTGATCGTGTTCGTGTGAGGGGTAGGTCTCCAGCCTTCAATGCATTAGCAGCTAATTTTGAGAATCCCGGTGCTAGGAACCTTTCAACTCCACCTCCAGTAGTCAGAAAGCTGTATCCAAAATCTAAGACACCTGATTCTGCAATACTGGCACCAAAATCTGCAGCCATAGCTGCACTTACTTCTTCTTTTGAACAACCACCTTCAGCACGAGAAACTATGATACCTCGGTCAGTTAAAGTGAGTCCAGTCACCCCCAAATCAAACCCTGATAAAAATGACAAGGAGAATTCTGCGAGCAGCCGTGTGGAGTCTCTTACCATAGAGGAAGATGTGAAGGAGGGTGAAGCAGAAGACGAGGAAGGTCTCTCCTTTCACCCGTATGAACGTCTTAAAGTATCTTCTCCAGATCCTGTACCAGGCATTGATGTGACTAAACGGGAGACTTATCTATCATCTGCGGAGTTCAAAGAGAAATTTGGGATGTCCAAGGATGCATTTTACAAGTTGCCCAAATGGAAACAGAACAAACTCAAAATGGCTATTCAGTTATTCTGA 2889 0.4282 MAVSMKDLDPAFQGAGQKAGLEIWRIENFNPIPVPKSSYGKFFTGDSYVILKTTASKNGALRHDIHYWLGKDTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHAEAEKHKTRLFVCRGKHVVHVKEVPFARSSLNHDDIFVLDTESKIFQFNGSNSCIQERAKALEVVQYIKDTYHEGKCEVAAIEDGKLMADSETGEFWGFFGGFAPLPRKTASDDDKPADSHPPKLLCIEKGQAENVETDSLKRELLDTNKCYILDCGLEVFVWMGRNTSLEERKSASGAADELVSGIDKLKPQIIRVIEGFETVTFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVKEEPQAYIDCTGHLQVWRVNGQEKILLPASNQSKFYSGDCYIFQYSYPGEDKEDCLIGTWIGKKSVEEDRASANSLASKMVESMKFQASQARIFEGNEPIHFYTILQTFIVFKGGLSDGYKTYTAEKEIPDETYNVDGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGSATSMEDQELVERMMDLIKPNLQTKPQREGTESEQFWDLLGGKSEYPSQKISREAESDPRLFSCNFSKGNLKVTEVYNFSQDDLMTEDIFILDCHTEIFVWVGQQVDPKSRMQALTIGEKFIEHDFLLENLSHVAPIYIAMEGSEPPFFTRFFKWDSAKSAMLGDSFQRKLKIVKNGGTPLMDKPKRRTSSAYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPGARNLSTPPPVVRKLYPKSKTPDSAILAPKSAAIAALTSSFEQPPSARETMIPRSVKVSPVTPKSNPDKNDKENSASSRVESLTIEEDVKEGEAEDEEGLSFHPYERLKVSSPDPVPGIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAIQLF* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2124 962 Gene3D Severin 380 520 IPR029006 -
Lja6g2124 962 MobiDBLite consensus disorder prediction 740 783 - -
Lja6g2124 962 MobiDBLite consensus disorder prediction 754 777 - -
Lja6g2124 962 PANTHER VILLIN-3-LIKE 1 962 - -
Lja6g2124 962 SUPERFAMILY Actin depolymerizing proteins 511 615 - -
Lja6g2124 962 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 256 427 IPR036180 -
Lja6g2124 962 Pfam Villin headpiece domain 927 962 IPR003128 GO:0003779|GO:0007010
Lja6g2124 962 CDD gelsolin_S5_like 517 608 - -
Lja6g2124 962 Gene3D Severin 133 246 IPR029006 -
Lja6g2124 962 SUPERFAMILY VHP, Villin headpiece domain 888 962 IPR036886 GO:0003779|GO:0007010
Lja6g2124 962 CDD gelsolin_S4_like 387 482 - -
Lja6g2124 962 MobiDBLite consensus disorder prediction 842 917 - -
Lja6g2124 962 SMART VILL_6 137 234 IPR007122 GO:0051015
Lja6g2124 962 SMART VILL_6 519 606 IPR007122 GO:0051015
Lja6g2124 962 SMART VILL_6 19 117 IPR007122 GO:0051015
Lja6g2124 962 SMART VILL_6 254 344 IPR007122 GO:0051015
Lja6g2124 962 SMART VILL_6 622 719 IPR007122 GO:0051015
Lja6g2124 962 SMART VILL_6 392 489 IPR007122 GO:0051015
Lja6g2124 962 Gene3D Villin headpiece domain 900 962 IPR036886 GO:0003779|GO:0007010
Lja6g2124 962 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Lja6g2124 962 Gene3D Severin 247 356 IPR029006 -
Lja6g2124 962 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Lja6g2124 962 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Lja6g2124 962 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Lja6g2124 962 Gene3D Severin 613 732 IPR029006 -
Lja6g2124 962 SUPERFAMILY Actin depolymerizing proteins 137 239 - -
Lja6g2124 962 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Lja6g2124 962 ProSiteProfiles Headpiece (HP) domain profile. 897 962 IPR003128 GO:0003779|GO:0007010
Lja6g2124 962 PANTHER VILLIN 1 962 IPR007122 GO:0051015
Lja6g2124 962 CDD gelsolin_S3_like 254 343 - -
Lja6g2124 962 CDD gelsolin_S1_like 12 124 - -
Lja6g2124 962 Gene3D Severin 6 132 IPR029006 -
Lja6g2124 962 Gene3D Severin 521 612 IPR029006 -
Lja6g2124 962 Pfam Gelsolin repeat 637 712 IPR007123 -
Lja6g2124 962 Pfam Gelsolin repeat 266 337 IPR007123 -
Lja6g2124 962 Pfam Gelsolin repeat 30 111 IPR007123 -
Lja6g2124 962 Pfam Gelsolin repeat 150 215 IPR007123 -
Lja6g2124 962 Pfam Gelsolin repeat 410 482 IPR007123 -
Lja6g2124 962 CDD gelsolin_S2_like 138 217 - -
Lja6g2124 962 SMART VHP_1 927 962 IPR003128 GO:0003779|GO:0007010
Lja6g2124 962 CDD gelsolin_S6_like 621 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2124 Lja-Chr6 50146728 50159178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2124 - - gmx:100808499 1734.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2124 6 50146728 50159178 Lja6g2124 6 50146728 50159178 ECH
Lja6g2124 6 50146728 50159178 Lja4g1640 4 15418926 15427970 PCT