Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1413 ATGGCGGCGGAGACTTTCCTATTCACTTCTGAGTCAGTGAACGAGGGGCACCCTGACAAGCTCTGTGACCAGATCTCTGATGCTGTGCTGGATGCATGCCTGGAGCAGGACCCTGATAGCAAGGTTGCATGTGAGACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGAGAGATCACCACCAAGGCCATTGTTGACTATGAGAAAATTGTGCGTGACACCTGCAGGAAAATTGGGTTTGTTTCAGCTGATGTTGGACTTGATGCTGACAACTGCAAGGTCCTTGTTTACATTGAGCAGCAGAGTCCTGATATTGCTCAGGGTGTGCATGGCCATTTGACCAAGAGGCCTGAGGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCTACCGATGAGACCCCTGAGCTGATGCCTCTGAGCCATGTCCTTGCTACCAAGCTTGGTGCTCGCCTAACTGAGGTTCGCAAGAATGGAACCTGCGCTTGGCTGAGACCTGATGGTAAGACCCAAGTCACTGTGGAGTATTACAATGACAATGGTGCTATGGTTCCTGTTCGCGTCCACACTGTTCTCATCTCAACCCAGCATGATGAGACTGTCACTAACGATGAAATTGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTGATTCCTGAGAAGTATCTTGATGAGAAGACCATCTTCCACCTGAACCCTTCTGGCCGTTTTGTCATTGGTGGTCCTCATGGTGATGCTGGTCTCACTGGGAGGAAGATCATCATTGACACTTATGGTGGATGGGGTGCTCATGGTGGTGGTGCTTTCTCAGGGAAGGACCCAACTAAGGTTGATAGGAGTGGGGCTTACATTGTGAGGCAAGCTGCTAAGAGCATTGTTGCTGTTGGACTTGCAAGGAGGTGCCTTGTCCAGGTTTCCTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACTTATGGTACTGGGAAGATCCCTGATAAGGAGATTCTGAAGATTGTGAAGGAGGAGTTTGATTTCAGGCCTGGTATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGCAACAACAGGTTCTTGAAGACTGCTGCTTATGGACATTTTGGAAGGGATGATGCTGACTTCACATGGGAAGTGGTGAAGCCTCTGAAGTGGGAGAAGGCTTAA 1182 0.4932 MAAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRKIGFVSADVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAVGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKEEFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKA* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1413 393 Hamap S-adenosylmethionine synthase [metK]. 4 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja4g1413 393 SUPERFAMILY S-adenosylmethionine synthetase 5 111 IPR022636 GO:0004478|GO:0006556
Lja4g1413 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 268 276 IPR022631 GO:0004478|GO:0006556
Lja4g1413 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 121 131 IPR022631 GO:0004478|GO:0006556
Lja4g1413 393 Gene3D - 13 281 - -
Lja4g1413 393 SUPERFAMILY S-adenosylmethionine synthetase 117 241 IPR022636 GO:0004478|GO:0006556
Lja4g1413 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 6 103 IPR022628 GO:0004478|GO:0006556
Lja4g1413 393 SUPERFAMILY S-adenosylmethionine synthetase 242 390 IPR022636 GO:0004478|GO:0006556
Lja4g1413 393 Gene3D - 6 244 - -
Lja4g1413 393 CDD S-AdoMet_synt 7 386 - -
Lja4g1413 393 Pfam S-adenosylmethionine synthetase, central domain 119 240 IPR022629 GO:0004478|GO:0006556
Lja4g1413 393 TIGRFAM metK: methionine adenosyltransferase 7 388 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja4g1413 393 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 3 393 - -
Lja4g1413 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 242 383 IPR022630 GO:0004478|GO:0006556
Lja4g1413 393 PIRSF MAT 1 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja4g1413 393 Gene3D - 119 383 - -
Lja4g1413 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 3 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1413 Lja-Chr4 12793921 12796146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1413 K00789 - gmx:100799139 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1413 4 12793921 12796146 Lja4g1413 4 12793921 12796146 ECH
Lja4g1413 4 12793921 12796146 Lja1g0520 1 4723349 4725052 ECH
Lja4g1413 4 12793921 12796146 Lja1g0463 1 4120959 4123638 ECH