Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0520 ATGGATACCTTCTTGTTCACTTCTGAGTCAGTGAATGAGGGTCACCCTGACAAGCTCTATCCAGAAAGCAAGGTTGCCTGTGAGACCTGCACCAAGACCAACCTGGTCATGGTGTTTGGAGAGATCACCACGAAAGCTAATCATGTTATCAAGCCTGTTATACCTAACAAATACTTGGATGAGAAGACCATTTTCCATCTCAACCCATCTGGCCGTTTTGTCATTGGTGGTCCTCATGGTGATGCAGGCCTCACCGGGCGCAAAATCATCGTTGACACCTATGGTGGTTGGGGAGCTCATGGTGGGGGTGCTTTCTCTGGGAAGGATCCCACCAAGCCTGACCCGTTATCTGTGTTTGTTGACACTTACGGAACTGGAAAGATTCCAGAGAAGGAGATTCTGAAGATTAGGGGTGGAAATGGAAGGTACTTGAAAACTGCTGCTTACGGCCACTTTGGTAGAGATGACCCTGATTTCACCTGGGAGGTGGTGAAGCCTCTCGAGTGGGAAAGTGATAATGTTCTGGTTTTCTTAGCTGCTTTCTTGCCTGTAGTTGTTGCTGTTTGTGGTTGCCTTTTCTTTTTTGTTCCTGTCTTACGTGGTGTAATTTTACACTACCTACTTTAA 627 0.4673 MDTFLFTSESVNEGHPDKLYPESKVACETCTKTNLVMVFGEITTKANHVIKPVIPNKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKPDPLSVFVDTYGTGKIPEKEILKIRGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLEWESDNVLVFLAAFLPVVVAVCGCLFFFVPVLRGVILHYLL* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 47 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 1 47 - -
Lja1g0520 208 Gene3D - 11 46 - -
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 47 114 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0520 208 Gene3D - 112 178 - -
Lja1g0520 208 SUPERFAMILY S-adenosylmethionine synthetase 75 170 IPR022636 GO:0004478|GO:0006556
Lja1g0520 208 Pfam S-adenosylmethionine synthetase, C-terminal domain 75 114 IPR022630 GO:0004478|GO:0006556
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 137 171 - -
Lja1g0520 208 Gene3D - 47 75 - -
Lja1g0520 208 ProSitePatterns S-adenosylmethionine synthase signature 2. 101 109 IPR022631 GO:0004478|GO:0006556
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 137 171 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 113 136 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0520 208 Gene3D - 76 111 - -
Lja1g0520 208 SUPERFAMILY S-adenosylmethionine synthetase 3 56 IPR022636 GO:0004478|GO:0006556
Lja1g0520 208 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 53 IPR022628 GO:0004478|GO:0006556
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 47 114 - -
Lja1g0520 208 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 4 113 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0520 Lja-Chr1 4723349 4725052 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0520 K00789 - ming:122091885 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1413 4 12793921 12796146 Lja1g0520 1 4723349 4725052 ECH
Lja1g0520 1 4723349 4725052 Lja1g0520 1 4723349 4725052 ECH