Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0463 ATGGCAGAGACCTTTCTATTCACCTCTGAATCTGTAAACGAGGGTCACCCTGACAAGCTGTGCGACCAGATCTCCGATGCGGTGCTCGATGCCTGTCTAGAGCAGGATCCTGACAGCAAGGTTGCCTGTGAGACTTGCACCAAGACTAACATGGTCATGGTCTTTGGAGAGATCACAACCAAGGCCAACGTGGACTATGAGAAGATCGTCCGTGACACGTGCCGTACAATCGGATTCGTGTCTGATGATGTGGGTCTTGATGCTGACAAATGCAAGGTCTTGGTGAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTGCATGGCCACTTCACCAAGCGCCCTGAGGACATTGGTGCTGGCGACCAAGGTCACATGTTTGGTTATGCAACTGATGAGACCCCTGAGCTCATGCCACTGAGCCATGTCCTTGCAACCAAACTAGGAGCTAAACTCACTGAGGTTAGGAAGAATGGTACCTGTGCTTGGCTGAGGCCCGATGGCAAGACACAAGTCACCGTTGAGTACTACAATGAGAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCAACCCAGCATGATGAGACTGTCAGCAATGACCAAATTGCTGCTGATCTTAAGGAGCATGTCATCAAGCCTGTCATCCCTGAGAAGTACTTGGATGAGAAGACTATCTTCCACCTTAACCCTTCAGGCCGCTTTGTCATTGGTGGCCCTCACGGCGATGCTGGCCTAACCGGAAGGAAGATCATCATTGATACTTATGGTGGCTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGCAAGGACCCTACTAAGGTTGACAGGAGTGGTGCCTACATTGTGAGGCAGGCAGCAAAGAGTATTGTGGCAAACGGCTTAGCCCGGAGGTGCCTTGTTCAGGTTTCTTATGCTATTGGTGTTCCTGAACCCTTGTCTGTCTTCGTTGACTCTTATGGAACTGGAAGTATCCCTGACAAGGAGATTCTTCAGATTGTGAAGGAGAATTTTGACTTCAGACCTGGAATGATGACCATCAACTTGGACCTTAAGAGGGGTGGAAACAGGTTCATCAAGACAGCTGCATATGGACACTTTGGAAGGGATGACCCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTGGGAGAAGCCTCAAGCTTAA 1182 0.5025 MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGAKLTEVRKNGTCAWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILQIVKENFDFRPGMMTINLDLKRGGNRFIKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0463 393 Pfam S-adenosylmethionine synthetase, N-terminal domain 5 102 IPR022628 GO:0004478|GO:0006556
Lja1g0463 393 SUPERFAMILY S-adenosylmethionine synthetase 116 240 IPR022636 GO:0004478|GO:0006556
Lja1g0463 393 Hamap S-adenosylmethionine synthase [metK]. 3 393 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0463 393 SUPERFAMILY S-adenosylmethionine synthetase 4 110 IPR022636 GO:0004478|GO:0006556
Lja1g0463 393 PIRSF MAT 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0463 393 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 1 1 392 - -
Lja1g0463 393 Gene3D - 12 280 - -
Lja1g0463 393 ProSitePatterns S-adenosylmethionine synthase signature 2. 267 275 IPR022631 GO:0004478|GO:0006556
Lja1g0463 393 Gene3D - 118 381 - -
Lja1g0463 393 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 392 IPR002133 GO:0004478|GO:0005524|GO:0006556
Lja1g0463 393 Pfam S-adenosylmethionine synthetase, central domain 118 239 IPR022629 GO:0004478|GO:0006556
Lja1g0463 393 ProSitePatterns S-adenosylmethionine synthase signature 1. 120 130 IPR022631 GO:0004478|GO:0006556
Lja1g0463 393 Gene3D - 5 243 - -
Lja1g0463 393 CDD S-AdoMet_synt 6 384 - -
Lja1g0463 393 SUPERFAMILY S-adenosylmethionine synthetase 241 390 IPR022636 GO:0004478|GO:0006556
Lja1g0463 393 Pfam S-adenosylmethionine synthetase, C-terminal domain 241 381 IPR022630 GO:0004478|GO:0006556
Lja1g0463 393 TIGRFAM metK: methionine adenosyltransferase 6 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0463 Lja-Chr1 4120959 4123638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0463 K00789 - pop:7495188 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0463 1 4120959 4123638 Lja1g0463 1 4120959 4123638 ECH
Lja4g1413 4 12793921 12796146 Lja1g0463 1 4120959 4123638 ECH