Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1327 ATGGGAGTCACAACCTTTACACACGAGTTTTCATCCTCTATTGCACCATCACGCATGTTCAAGGCCTTGATCATAGACTCCAAAAATTTGATTCCAAAGCTCTTGCCGCAGTTTGTAAAAGATGTCCAAGTGATCCAAGGAGAGGGAGAAGCTGGAAGCATTGAACAAGTCAACTTCAATGAAGCTAGCCCCTTTAAATATCTGAAGCAGAGGATTGATGAGGTTGATAAGGAGAACTTTATTTGCAAATACACAATGATTGAAGGGGATCCACTAGGTGACAAGCTTGAGTCTATAGCTTATGAGGTAAAGTTTGAGGCCACTAGTGATGGAGGTTGCCTATGTAAAATGACAAGCCATTACAAGACCAATGGCGACTTTGAAGTTCAAGAGGAACAAGTAAAAGAAGGAAAAGAAAGCACGATTGGGATTTACAAAGTTGTGGAGTCTTACTTGCTGGAGAACCCACAAGTATATGCTTAA 483 0.4099 MGVTTFTHEFSSSIAPSRMFKALIIDSKNLIPKLLPQFVKDVQVIQGEGEAGSIEQVNFNEASPFKYLKQRIDEVDKENFICKYTMIEGDPLGDKLESIAYEVKFEATSDGGCLCKMTSHYKTNGDFEVQEEQVKEGKESTIGIYKVVESYLLENPQVYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1327 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Lja4g1327 160 CDD Bet_v1-like 5 152 - -
Lja4g1327 160 SUPERFAMILY Bet v1-like 2 159 - -
Lja4g1327 160 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 160 - -
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 PANTHER - 1 160 - -
Lja4g1327 160 SMART Bet_v_1_2 1 155 IPR000916 GO:0006952
Lja4g1327 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja4g1327 160 Gene3D - 1 160 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1327 Lja-Chr4 11825823 11826862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1327 - - gmx:100500506 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1327 4 11825823 11826862 Lja4g1327 4 11825823 11826862 ECH
Lja4g1327 4 11825823 11826862 Lja6g2276 6 51652838 51653754 PCT
Lja6g2275 6 51639269 51641254 Lja4g1327 4 11825823 11826862 PCT