Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2275 ATGGGTGTTGTTAGTGATGAATTTTCCACCCCTGCTGCTGTGGCTCCTGCTAGGCTTTTCAAAGCCATGTCAACTGATTTCCACAACGTCTTCCCTAAGATTGTTGAACCCATCCAGAGTGTTGAATTCATCGAAGGAACCGGGGCTGCTGGAACCATCAAGAAGATGACCGTGCTTGATGGTGGTGAAAGCAAGTATATGCTGCACAGAGTTGATGAAGTTGATGAGAAAGAGCTTGTGTACAACTTCAGCATAATTGGGGGCACTGGGTTGGCTGACCCATTGGAGAAGGTCCAATTTAAGAGCAAATTTGTGGAAGGCCCAAATGGGGGATGCATTAGGGAGGTCCAAGCTCAATACTTCACCAAAGGTGATACCACCCTCAGTGAGGAGACTGTGAAAGCTTCTCAAGCCAAGGTGAATGGGATTGTAAAGATTGCTGAAGGTTTCCTTTTGGCAAATCCTGATTATAATTGA 477 0.4591 MGVVSDEFSTPAAVAPARLFKAMSTDFHNVFPKIVEPIQSVEFIEGTGAAGTIKKMTVLDGGESKYMLHRVDEVDEKELVYNFSIIGGTGLADPLEKVQFKSKFVEGPNGGCIREVQAQYFTKGDTTLSEETVKASQAKVNGIVKIAEGFLLANPDYN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2275 158 Pfam Pathogenesis-related protein Bet v 1 family 9 153 IPR000916 GO:0006952
Lja6g2275 158 PANTHER - 1 157 - -
Lja6g2275 158 SUPERFAMILY Bet v1-like 4 158 - -
Lja6g2275 158 CDD Bet_v1-like 2 151 - -
Lja6g2275 158 Gene3D - 2 158 IPR023393 -
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2275 158 PANTHER PATHOGENESIS-RELATED PROTEIN 10 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2275 Lja-Chr6 51639269 51641254 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2275 - - gmx:100810644 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2275 6 51639269 51641254 Lja6g2275 6 51639269 51641254 ECH
Lja6g2275 6 51639269 51641254 Lja4g1327 4 11825823 11826862 PCT