Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2276 ATGGGTGTTTTCACTTTCCAGGATGAGACTACCTCCACTGTAGCTCCAGCTAGGCTTTACAAAGCTCTCACCATTGATGGTGATTCCATCATCCCAAAGGTTATTCCAGGCTTCAAGAGTGTTGAAACTGTTGAAGGAGATGGTGGTGTTGGAACCATCAAGAAGCTCACATTCGTTGAAGGTGCGGAAACCAAGAACCTGTTGCACAAAATTGAATCAATTGATGAGGCCAATTTTGGATACCACTACAGCATTGTTGGAGGTTCTGAGCTACCAGACACAGTAGAGAAGATCTCATTCGAGGCCAAGTTGGTTGCAGGGTCTGATGGAGGTTCCATTGCAAAGCTCACAGTGAACTACCACACCAAAGGTGATGCTAGTCCCTCTGAAGAGGAGATCAAGGCTGGCAAGGCCAAGGGTGATGGTCTTTTCAAGGCGATCGAGGGTTACGTTTTGGCCAACCCTGACTACAACTAA 477 0.4696 MGVFTFQDETTSTVAPARLYKALTIDGDSIIPKVIPGFKSVETVEGDGGVGTIKKLTFVEGAETKNLLHKIESIDEANFGYHYSIVGGSELPDTVEKISFEAKLVAGSDGGSIAKLTVNYHTKGDASPSEEEIKAGKAKGDGLFKAIEGYVLANPDYN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2276 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Lja6g2276 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 SUPERFAMILY Bet v1-like 2 158 - -
Lja6g2276 158 Gene3D - 2 158 IPR023393 -
Lja6g2276 158 CDD Bet_v1-like 4 151 - -
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2276 158 PANTHER - 1 157 - -
Lja6g2276 158 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2276 Lja-Chr6 51652838 51653754 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2276 - - gmx:100500525 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2276 6 51652838 51653754 Lja6g2276 6 51652838 51653754 ECH
Lja4g1327 4 11825823 11826862 Lja6g2276 6 51652838 51653754 PCT