Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0270 ATGGCGACGGCGACGGTGGTGATTTTCGACTTTGATCGGACCATAATCGACGATGACAGCGACTCATGGATCATCGCCGAAATGGGTCTCACCCCCATTTTCAGCCAACTTAGCTCCACCATGCCCTGGACCCCTCTCATGAACAGAATGATGGAGGAGCTTCACTCGCAAGGGTTCACCACCGGCGACATTGCTCAGTGCCTGAAACGGGCTTTATTGCATCCAAACATCGTTTCAGCGATCAAATCTGCACACGCTCTTGGGTGTGAGTTGAGGATAATTAGTGACGCAAATGCGTTCTACATTGATACCATTCTGGAACACCATGGTTTATCTGGGTGCTTTTCAGAGATCAACACAAACCCATCTTTTGTTGATGAAGAGGGTCGCCTTCGGATCGCGCCATTTCATGATACAGCGTTGGATCCTCATGATTGTCCCCTCTGCCCTCCCAATATGTGCAAGGGTTTAGTGATTGACCGAATCCGGGGTTCTTTACCTGAAAACAAAAGATTCATCTACATTGGAGATGGAGCAGGTGATTATTGCCCGACTTTGAAGCTGGGGAGAGGTGAGTTTGTGATGCCGAGGAAGAATTATCCCCTCTGGAACCGGATATGCAGTGACCCAAAACTAGTTGAAGCAGAAGTTCATGATTGGAGCAGTGGGGAGGAGTTGGAGAGCATACTACTGAAGCTGATCAACAAATTAGTTACATAA 720 0.4806 MATATVVIFDFDRTIIDDDSDSWIIAEMGLTPIFSQLSSTMPWTPLMNRMMEELHSQGFTTGDIAQCLKRALLHPNIVSAIKSAHALGCELRIISDANAFYIDTILEHHGLSGCFSEINTNPSFVDEEGRLRIAPFHDTALDPHDCPLCPPNMCKGLVIDRIRGSLPENKRFIYIGDGAGDYCPTLKLGRGEFVMPRKNYPLWNRICSDPKLVEAEVHDWSSGEELESILLKLINKLVT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0270 239 Pfam Putative Phosphatase 5 234 IPR016965 GO:0016791
Lja4g0270 239 PIRSF PLP_phosphatas_PHOSPHO2 1 238 IPR016965 GO:0016791
Lja4g0270 239 PANTHER THIAMINE PHOSPHATE PHOSPHATASE-LIKE PROTEIN 1 237 - -
Lja4g0270 239 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 237 IPR016965 GO:0016791
Lja4g0270 239 SUPERFAMILY HAD-like 5 191 IPR036412 -
Lja4g0270 239 Gene3D - 1 192 IPR023214 -
Lja4g0270 239 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 6 198 IPR006384 GO:0016791
Lja4g0270 239 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0270 Lja-Chr4 2100942 2102797 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0270 K13248 - gmx:100306472 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0270 4 2100942 2102797 Lja3g1481 3 15808163 15809507 ECH
Lja4g0270 4 2100942 2102797 Lja3g5050 3 92673205 92674494 ECH
Lja4g0270 4 2100942 2102797 Lja4g0270 4 2100942 2102797 ECH