Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5050 ATGGCTGGAATTGTGGTTGTTTTCGACTTCGACAAAACGATCATTGACTGTGATAGTGATAACTGGGTTGTTGATGAATTGGGTTTCACTGATTTGTTCAATAACCTCCATTCCACCATGCCATGGAACACTCTCATGAATAGGATGATGATGGAACTTCATTCTCATGGGAAAACAATTGAAGACATTGAGCAAGTTTTGCAAAGGATTCCTATACACCCTAGAATCATCCCTGCCATTAAAGCTGCTAGGAATATGGGGTGTGATTTGAGGATCGTTAGCGATGCCAACACGTTCTTCATTGAGACAATTTTGAAACACTTAGGAATAAGGGAGTGCTTCTCAGAGATCAACACTAACCCAAGTTATGTTGATGATGAAGGAAGGTTGACAATTTTGCCTTACCATGTGCACGGATGCTGTAATCCTTGCCCTCCAAACATGTGCAAGGGTCTAATCATAAAGAGAATCCAAGATACAATATCACATGAGGAAAACAAGAGGTTCATCTATCTTGGTGATGGTGCTGGAGATTATTGCCCAAGTTTGAAGCTTAAAGACAAAGACTTTGTGATGCCAAGGAAGAATTTTCCTGTGTGGGACTTGATATGCAAAGACCCTTCATGTATTAAAGCTGAAATCCATGAGTGGAGCGATGGAGAAGAGTTCGAACAAGTTTTGCTGCACCTAATCAACAAAATCTCCATGCATGACGACATTGCTCAATTCATGTCATCTAATTGCAAGCTTAAAGCAATATTCCCTCAAGTTCTTCCAGTTCAACAATAA 789 0.4018 MAGIVVVFDFDKTIIDCDSDNWVVDELGFTDLFNNLHSTMPWNTLMNRMMMELHSHGKTIEDIEQVLQRIPIHPRIIPAIKAARNMGCDLRIVSDANTFFIETILKHLGIRECFSEINTNPSYVDDEGRLTILPYHVHGCCNPCPPNMCKGLIIKRIQDTISHEENKRFIYLGDGAGDYCPSLKLKDKDFVMPRKNFPVWDLICKDPSCIKAEIHEWSDGEEFEQVLLHLINKISMHDDIAQFMSSNCKLKAIFPQVLPVQQ* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5050 262 PIRSF PLP_phosphatas_PHOSPHO2 1 235 IPR016965 GO:0016791
Lja3g5050 262 Pfam Putative Phosphatase 4 231 IPR016965 GO:0016791
Lja3g5050 262 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 252 IPR016965 GO:0016791
Lja3g5050 262 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 183 - -
Lja3g5050 262 PANTHER INORGANIC PYROPHOSPHATASE 1 252 - -
Lja3g5050 262 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 195 IPR006384 GO:0016791
Lja3g5050 262 Gene3D - 2 191 IPR023214 -
Lja3g5050 262 SUPERFAMILY HAD-like 5 201 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5050 Lja-Chr3 92673205 92674494 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5050 K13248 - gmx:100785878 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1481 3 15808163 15809507 Lja3g5050 3 92673205 92674494 ECH
Lja4g0270 4 2100942 2102797 Lja3g5050 3 92673205 92674494 ECH
Lja3g5050 3 92673205 92674494 Lja3g5050 3 92673205 92674494 ECH
Lja3g1481 3 15808163 15809507 Lja3g5050 3 92673205 92674494 PCT