Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g5007 ATGTTTTCAGGGGTGAGCGGAATCCTCAACAGAGGCCAAAAGCTCAGAGGGACAGTGGTGTTGATGCGCAAAAATGTGTTGGACTTCAACAACATTGCTGATATCGGCACCGGAAACCTCGGAGGAGTCATTGGCACCGGGCTCAACGTCATCGGTTCAACCGTTGATGGCCTTACTGCCTTCTTGGGTCGTAGCGTCGCCCTCCAGCTGATCAGTGCCACCAAGGCTGATGAGAATGGAAAAGGGAAAGTTGGAAAGGACACATTTTTGGAAGGCATCATTGCCTCACTACCAACCTTGGGAGCAGGCGAGTCTGCATTCAACATTCACTTTGAATGGGACGATAGCATGGGAATTCCTGGTGCATTTTACATAAAGAACTACATGCAAGTTGAGTTTTTCCTCAAGAGCTTAACTCTTGAAGATGTCCCAAACCATGGAACCATCCGTTTTGTTTGCAACTCTTGGGTTTACAATTCTAAACTTTACAAAAACCCACGCATTTTCTTTTCCAACAAGACATATCTTCCAAGTGAAACACCATCTCTACTAGTGAAGTACAGAGAAGAAGAGTTGAAGATTTTAAGAGGAGATGGAAAAGGGGAGCGCAAGGAATATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATCACGGCGAAAATCATGCTCGGCCGATTCTTGGAGGGTCTAGCACCCATCCATACCCTCGCAGGGGAAGAACTGGTCGATATCCATCAAGGAAAGATCCAAACTGTGAGAAACCAGGGGAAGTTTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAGTCCTCAGATTTTCTTACATATGGAATCAAATCTTTAACTCAATTTGTGTTACCAGCTTTCGAATCTGCGTTCGATATGAATTTCACTCCAAATGAGTTTGATAGCTTCCAAGATGTGAGAGACCTTTTTGAAGGTGGAATTAAGCTTCCTTTAGATGTAATCAGCACAATTAGCCCCTTACCAGTTATCAAAGAACTCTTCCGTACTGATGGTGAACAGTGCCTCAAGTTTCCACCACCTCACATCATTCAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGATGCTTGCTGGTGTAAATCCTTGTGTTATTCGTGGTCTTCAAGAATTTCCTCCGAAAAGTAATCTGGATCCTACAATCTATGGTGATCACACCAGTAAGATAACCCCAGAAGTCCTGGAGCTAGATGGGTGCACACTGGATGAGGCACTTGCTAGTGGGAGGCTATTTATACTAGATTACCATGACATATTCATGCCATATCTTAGAAAGATAAACCAGACTAATGCCAAGGCTTATGCCACCAGAACTATTCTTTTCTTGAAAGAAAATGGAACTTTGAAGCCACTGGCCATAGAATTGAGTTTACCTCATCCTGCTGGAGACAAATCAGGCGCTGTTAGTCAAGTCATTTTACCTGCAAAAGAAGGTGTTGAAAGTACTATTTGGCTACTAGCTAAAGCTTATGTGGTTGTGAATGATTCCTGCTATCATCAACTCATGAGCCATTGGTTAAACACTCATGCTGTGATCGAGCCGTTCGTCATAGCAACACACCGGCAGCTTAGCGCGCTTCACCCGATTTATAAACTTCTAACTCCTCATTATCGCGACACCATGAACATCAATGCACTTGCTAGGAATGCTTTGATTAATGCTGATGGCATAATAGAGAGAACTTTTTTGCCCAACAAGTATTCTGTGGAAATGTCTTCAGCAGTTTATAAGAATTGGATTTTCCCCGATCAAGCACTACCTGCTGATCTTATCAAGAGAAATGTTGCTGTTAAAGATTCATCTGCTCCACATGGACTTCGTCTTCTGATAGAGGACTACCCTTATGCTGTTGATGGACTAGAGATATGGGCTGCTATCAAAACATGGGTAAAAGATTATGTCTCATTGTACTATGCAACAGACAATGATGTCAAAAATGACTCTGAACTCCAACATTGGTGGAAAGAAGCTGTGGAGGTAGGTCATGGTGATTTGAAAGACAAGCCATGGTGGCCTAAGTTGCAAACACTTGAAGAGCTCATTGAAACTTGCTCTATCATCATATGGACTGCATCGGCGCTCCACGCAGCAGTTAATTTTGGGCAATATCCTTATGGAGGTTTTATCCTTAACCGTCCGACTATGAGTAGAAGATTGCTTCCTGAGAAAGGAACTGCAGAATATGATGAAATGGTGAAGAGTCATCAAAAGGCTTATTTGAGAACAATCACACCAAAGCTTCAGGCTCTCATTGACCTTTCAGTGATAGAAATCTTGTCCAGGCATGCTTCTGATGAGGTCTACCTTGGAGAAAGGGAGAATCCACATTGGACCTCTGATGAAAGAGCTTTACAAGAATTTGAGAAGTTTGGAAGTAAGCTGGCAGAAATTGAGGCAAAACTTGCTAAGAAGAACAGTGATGCGAATCTGAGGAATCGAATCGGGCCGGTTGAATTGCCATACACTTTGCTTCATCACAAAAGTGAAGAAGGGTTAACTTTTAGAGGAATTCCTAACAGCATCTCTATCTAA 2589 0.4249 MFSGVSGILNRGQKLRGTVVLMRKNVLDFNNIADIGTGNLGGVIGTGLNVIGSTVDGLTAFLGRSVALQLISATKADENGKGKVGKDTFLEGIIASLPTLGAGESAFNIHFEWDDSMGIPGAFYIKNYMQVEFFLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKNPRIFFSNKTYLPSETPSLLVKYREEELKILRGDGKGERKEYERIYDYDVYNDLGNPDHGENHARPILGGSSTHPYPRRGRTGRYPSRKDPNCEKPGEVYVPRDENFGHLKSSDFLTYGIKSLTQFVLPAFESAFDMNFTPNEFDSFQDVRDLFEGGIKLPLDVISTISPLPVIKELFRTDGEQCLKFPPPHIIQVSKSAWMTDEEFAREMLAGVNPCVIRGLQEFPPKSNLDPTIYGDHTSKITPEVLELDGCTLDEALASGRLFILDYHDIFMPYLRKINQTNAKAYATRTILFLKENGTLKPLAIELSLPHPAGDKSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATHRQLSALHPIYKLLTPHYRDTMNINALARNALINADGIIERTFLPNKYSVEMSSAVYKNWIFPDQALPADLIKRNVAVKDSSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVKDYVSLYYATDNDVKNDSELQHWWKEAVEVGHGDLKDKPWWPKLQTLEELIETCSIIIWTASALHAAVNFGQYPYGGFILNRPTMSRRLLPEKGTAEYDEMVKSHQKAYLRTITPKLQALIDLSVIEILSRHASDEVYLGERENPHWTSDERALQEFEKFGSKLAEIEAKLAKKNSDANLRNRIGPVELPYTLLHHKSEEGLTFRGIPNSISI* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g5007 862 Gene3D - 275 363 IPR027433 -
Lja3g5007 862 Pfam Lipoxygenase 184 844 IPR013819 GO:0016702|GO:0046872
Lja3g5007 862 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 862 IPR013819 GO:0016702|GO:0046872
Lja3g5007 862 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 175 IPR036392 GO:0005515
Lja3g5007 862 PANTHER LIPOXYGENASE 1 862 IPR000907 GO:0016702|GO:0046872
Lja3g5007 862 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Lja3g5007 862 Gene3D - 176 274 - -
Lja3g5007 862 SUPERFAMILY Lipoxigenase 176 862 IPR036226 -
Lja3g5007 862 Gene3D - 364 495 - -
Lja3g5007 862 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Lja3g5007 862 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Lja3g5007 862 Gene3D PLAT/LH2 domain 4 175 - -
Lja3g5007 862 CDD PLAT_LH2 14 172 IPR042057 -
Lja3g5007 862 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Lja3g5007 862 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Lja3g5007 862 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Lja3g5007 862 SMART LH2_4 13 172 IPR001024 GO:0005515
Lja3g5007 862 Pfam PLAT/LH2 domain 79 170 IPR001024 GO:0005515
Lja3g5007 862 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
Lja3g5007 862 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 862 - -
Lja3g5007 862 MobiDBLite consensus disorder prediction 223 258 - -
Lja3g5007 862 ProSiteProfiles PLAT domain profile. 46 171 IPR001024 GO:0005515
Lja3g5007 862 Gene3D - 496 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g5007 Lja-Chr3 92194495 92200976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g5007 1 862 Acyl Lipid Metabolism Gene Families AT1G55020 56.965 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g5007 K15718 - gmx:547774 1501.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5007 3 92194495 92200976 Lja3g1540 3 16712630 16717816 PCT
Lja3g1539 3 16700236 16705940 Lja3g5007 3 92194495 92200976 PCT