Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1540 ATGTTAGGAGGATTAGGAATCTTTGACAAGAGTCAAAAGATTAAGGGCACTGTAGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCTTAACATCCATCCCTAAAGGGGGTATTCCTGGCATTGCCGGCAATATCTTCGGACTAGCCACCGATGCTGCCGGCAAAGTAGTGGATTTTTCCACTGCCATCCTCAGCCGTAGCGTCGCCATACAGTTGATCAGTGCTACCAAGACTGATGCATCTGGAAAGGGAAAGGTTGGAAACCTAACCTACGTGGATAAACACATTCCCTCGTTACCAACCTTGGGAGCTAGGCAAGAAGCATACAGCGTCTCCTTCGACTACGACGCCGATTTCGGAATCCCAGGAGCATTCTACTTCAAAAACTTCACCCAGGACGAGTTCTTCTTCGTCAGTCTCACCCTCGAAGACATTCCCAATCACGGAACCATTCACTTCGTCTGCAACTCCTGGGTTTACAACGCCAAAAACTACAAGAAGGATCGCATTTTCTTCACCAACGATGCTTATCTTCCAGGTTCAACACCAAAAGCTCTGGTTAAGTACAGAGAAGAAGAGTTGGAGAATTTGAGAGGAGATGGATCAGGGGAACGCAAAGTGCATGAAAGGATCTATGATTATGATGTTTACAATGATTTGGGAAATCCAGATGGTGGTGACAATTTGGCTCGCCCAACCCTTGGAGGCTCTGCCAATTATCCCTACCCTCGCAGGGTTAGAACTGGTAGACAACCAACCAGAAAAGATCCTACATGTGAGAAGCCTGCTGTGCAGTTGTATGTGCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCCTTGGTTATGGAATAAAATCTGTTTCTCATGATCTGATACCTGCATTTAAGTCTTTGATCTTTGATTTAAGTATCACGAAAAGCGAGTTCGATAGCTTCGATGAGGTGCGTGATCTCTTTGAAGGTGGAATTTGGCTGCCTACGGATTTGCTCCGCACAATTAGCCCCTTACCGGTTCTCAGTGCGGTATTGCCCAGTGAAGGTGAAAACGTGCTCACATTTCCGAAACCTCATGTTATCCAAGTTAGCAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGATTGCTGGAGTAAATCCTAATGTGATTTGCCGTCTCCAAGAGTTCCCACCACGAAGCAACCTTGATGTCGCTATCTATGGCGATCGAACTAGTAGAATAACAAAAGAAAACTTGGAGATTAACCTTGGGGGGCTCACAGTAGAGGAGGCACTTGGTGCTCAGAGATTGTTCATACTAGATTACCATGATGTGTTCCTGCCTTATGTGGAGAGGATAAACAAAATTAAAAAGGCTTATGCCACCAGGACAATCCTATTCTTGAAAGATGATGGGGCTTTAACACCACTTGCCATCGAGTTGAGTCTTCCTGATTCAGAAAGCAAAGTAATCTTGCCTGCAAATGAAGGGGTTGAGAGTACTATTTGGCTATTGGCTAAGGCTTATGTAATTGTAAATGACTCTTGCTATCATCAGCTCATGAGCCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGTCATAGCAACAAATAGACATCTCAGTGTCCTTCACCCTATTTATAAGCTTTTACATCCTCATTACCGTGACACAATAAATATAAATGGACTTGCTCGAGAGTCCTTGATTAATGCAGGTGGCATTATAGAACAGTCGTTTTGCCCCGGACCTAATTCCATAGAGATGTCTTCAGCAGTTTACAAGGATTGGGTCTTTACTGACCAAGCATTACCAGCTGATCTTATTAAGAGAGGAATGGCTGTTGAGGATCCCTCTGCCCCCCATGGTGTTCGCCTTGTTGTAGAGGACTACCCTTATGCTGTTGATGGACTAGAGATTTGGGATGCTATTACGAAGTGGGTTCAAGAGTATGTCTCTTTATATTACCCAACAGATGATGCAGTTAAGAAAGACACTGAGCTACAAACTTGGTGGAAAGAAGTTGTGCAAAGAGGTCATGCTGACTTGAGCGACAAGCCATGGTGGCCTAAGATGCAAACTCTTCAAGAGTTGATTAAATCCTGCTCTATTATCATATGGACTGCTTCGGCTCTTCACGCTGCTGTTAATTTTGGACAATATCCATATGGAGGTTTAATCATTAACCGTCCAACAATCAGCAGAAGATTGATCCCAGAACCAGGAACTCCAGAGTATGATGAGATGGTGAAAAGTCCTCAAAAGGCTTACTTAAGAACCATTACGCCAAAGTATGAGACTCTTATTGATCTTACTGTGATAGAGATATTGTCTAGGCATGCTTCTGATGAGATCTACCTTGGGGAGAGGGAGAATCCAGAATGGACATCTGATACAAAGGCAAAACAAGCCTTCCAAAAGTTTGGAAGCAAGCTGGCAGAGATTGAAGCAAAAATCAATGGGAGGAACAATGATTCAAGTTTGAAAAACCGATTTGGGCCAGCTCAACTGCCCTACACTCTGCTCCTTCGTTCCAGTAAGGAAGGGTTAACTTTCAGAGGAATTCCCAACAGCATCTCTATTTAG 2586 0.4366 MLGGLGIFDKSQKIKGTVVLMPKNVLDFNALTSIPKGGIPGIAGNIFGLATDAAGKVVDFSTAILSRSVAIQLISATKTDASGKGKVGNLTYVDKHIPSLPTLGARQEAYSVSFDYDADFGIPGAFYFKNFTQDEFFFVSLTLEDIPNHGTIHFVCNSWVYNAKNYKKDRIFFTNDAYLPGSTPKALVKYREEELENLRGDGSGERKVHERIYDYDVYNDLGNPDGGDNLARPTLGGSANYPYPRRVRTGRQPTRKDPTCEKPAVQLYVPRDENFGHLKSSDFLGYGIKSVSHDLIPAFKSLIFDLSITKSEFDSFDEVRDLFEGGIWLPTDLLRTISPLPVLSAVLPSEGENVLTFPKPHVIQVSKSAWMTDEEFGREMIAGVNPNVICRLQEFPPRSNLDVAIYGDRTSRITKENLEINLGGLTVEEALGAQRLFILDYHDVFLPYVERINKIKKAYATRTILFLKDDGALTPLAIELSLPDSESKVILPANEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIYKLLHPHYRDTININGLARESLINAGGIIEQSFCPGPNSIEMSSAVYKDWVFTDQALPADLIKRGMAVEDPSAPHGVRLVVEDYPYAVDGLEIWDAITKWVQEYVSLYYPTDDAVKKDTELQTWWKEVVQRGHADLSDKPWWPKMQTLQELIKSCSIIIWTASALHAAVNFGQYPYGGLIINRPTISRRLIPEPGTPEYDEMVKSPQKAYLRTITPKYETLIDLTVIEILSRHASDEIYLGERENPEWTSDTKAKQAFQKFGSKLAEIEAKINGRNNDSSLKNRFGPAQLPYTLLLRSSKEGLTFRGIPNSISI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1540 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 178 IPR036392 GO:0005515
Lja3g1540 861 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 5 861 - -
Lja3g1540 861 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
Lja3g1540 861 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Lja3g1540 861 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Lja3g1540 861 SUPERFAMILY Lipoxigenase 180 861 IPR036226 -
Lja3g1540 861 Pfam Lipoxygenase 187 843 IPR013819 GO:0016702|GO:0046872
Lja3g1540 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Lja3g1540 861 PANTHER LIPOXYGENASE 5 861 IPR000907 GO:0016702|GO:0046872
Lja3g1540 861 CDD PLAT_LH2 13 175 IPR042057 -
Lja3g1540 861 ProSiteProfiles PLAT domain profile. 45 174 IPR001024 GO:0005515
Lja3g1540 861 Gene3D - 495 860 - -
Lja3g1540 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 861 IPR013819 GO:0016702|GO:0046872
Lja3g1540 861 Gene3D - 279 367 IPR027433 -
Lja3g1540 861 Gene3D - 179 278 - -
Lja3g1540 861 Gene3D PLAT/LH2 domain 4 178 - -
Lja3g1540 861 MobiDBLite consensus disorder prediction 228 259 - -
Lja3g1540 861 Gene3D - 368 494 - -
Lja3g1540 861 Pfam PLAT/LH2 domain 77 173 IPR001024 GO:0005515
Lja3g1540 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Lja3g1540 861 PRINTS Plant lipoxygenase signature 394 413 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 310 331 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 355 371 IPR001246 GO:0016491
Lja3g1540 861 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Lja3g1540 861 SMART LH2_4 12 175 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1540 Lja-Chr3 16712630 16717816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1540 1 861 Acyl Lipid Metabolism Gene Families AT1G55020 52.781 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1540 K15718 - gmx:547856 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5007 3 92194495 92200976 Lja3g1540 3 16712630 16717816 PCT