Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1539 ATGTTTGGCATCTTTGACAAGAGCAAAAAGATCAAGGGCACTTTGGTGTTGATGCCCAAAAATGTGTTAGACTTGAACGCCATTGTGTCCGCCCGTCGAGGTGGTGTTCTCGGGCTTCCTAGGAGCGCACTCGGCCTCGTTATTGACGTTGCCGGCCAAGTGGTTGATGGCGCCACCGCCATCCTCAGCCGTAACATCCATGTCCAATTGATCAGTGCTACCAAAACTAATGCAAGTGGAGTTGGGTTACTTGGAGAGGAAACCTTTCTGCAGAAACATATTCCCTCATTACCAACCTTGGGAGCGAGGCAGGAGGCATACAGCGTCGAATTTGATTACGATGCCAATTTCGGAATTCCTGGAGCATTTTACATCAAAAACTATATGCAATGCGAGTTCTTCCTTGTCAGCTTGACCCTCGAAGACATTCCCAATCACGGAACCATTCGCTTTGATTGCAACTCATGGGTTTACAACTTTAAATTATACAATAACAGGCATCGCATTTTCTTTACCAATGATACATATCTCCCAGGTCAAACACCAGCAGGACTTGTTAAATACAGAAAAGAAGAATTGGAGAATTTGAGAGGAGATGGATCAGGGGAGCGCAAAGAGCATGAAAGGATTTATGACTATGATGTTTACAATGATTTGGGAAATCCAGATGGTGGTGCACCTCGCCCAACCCTTGGAGGGTCTGCCGAACTTCCCTATCCTCGCAGGGTCAGAACCGGTAGAAAATCTACCAGGACAAATCGTGCAGCTGAGAAGCCAGCTGTGGACATCTATGTCCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTTCTTACATATGGAATAAAATCTTTATCTCAGAGCGTGTTGCCTTTGTTCAAATCTGTGATTTTCGATTTGAACTTCACGCCGAATGAGTTTGATAGCTTCGATGAAGTGCGTGGACTCTATGAAGGTGGAATTAAACTTCCTACAAATATAATCAGCCAAATCAGCCCTTTGCCTGTTCTTAAGGAAATCTTTCGCACTGATGGTGAAAATGTCCTTCAATTTCCACCACCTCATGTAATCCGAGTTAGCAAGTCTGCATGGATGACTGATGTTGAATTTGGAAGAGAGATGATTGCTGGTGTTAATCCTAATGTGATTCGTTTGCTACAAGAGTTCCCACCAAAAAGCACGCTAGATGTCAATGGTTTTGGTGATCAAAATAGTACACTAACAAAAGAACACTTGGAGATTAACCTTGGTGGGCTCACAGTAGATGAGGCGCTTGGCGCTAAGAGATTGTTCATACTAGATTACCATGATGCTTTCATGCCTTATTTGGAGAAGATAAACAAACTTCCATCCTCAAAGGCTTATGCCACCAGAACAATCCTGTTCTTGAAAGATGATGGGGCTTTAACCCCACTTGCCATTGAGTTGAGTCTACCACATCCAAATGGAGTTAAATATGGTGCTGAAAGCAAAGTCGTCTTACCCGCTAAAGAAGGTGCTGAAGGAACAATTTGGCTACTGGCCAAGGCTCATGTTATTGTGAATGACTCAGGCTATCATCAACTCATTACCCACTGGTTAAATACTCATGCAACGATTGAGCCGTTCGCCATAGCAACAAACAGACATCTCAGTGCCCTTCACCCTATTAACAAGCTCTTATATCCTCACTACCGTGACACAATAAATATCAACGCACTTGCTAGAGCATCCCTGATTAATGCAGAAGGCATTATCGAGCAATCATTTTTGCCTGGAGAGTACTCTTTGGAGATTTCTTCTGTAGTTTACAAGAATTGGGTTTTCCCTGACCAAGCATTACCAGCTGATTTAATTAAGAGAGGAATGGCAGTTGAGGATCCCTCTGCCCCCCATGGTGTTCGCCTTGTGTTAGAGGACTACCCTTATGCTGTTGACGGACTTGAGATATGGGATGCTATTAAGAAGTGGGTTCAAGACTACGTCTCCTTATATTACCCAAGTGATGATGCAGTCCAGAAAGACACTGAACTACAAGCTTGGTGGAAGGAAGTTGTGCAAAGGGCTCATGCTGACTTGAGCGACAAGCCATGGTGGCCAAAGATGCAAACTCTTGAAGAATTGATTCAATCTTGCTCTATCATCATATGGATCGCTTCGGCTCTTCATGCAGCTGTTAATTTCGGACAATATCCTTATGGAGGTTATATCCTGAACCGGCCTACACTGAGCAGAAGATGGATCCCGGAAAATGGAACTCCGGAATATGATGAGATGGTGAAAAATCCTCAGAAGGCTTACTTGAGAACCATCACACCGAAGTACCAGACTCTTGTTGATCTTTCTGTGATAGAGATATTGTCTAGGCATGCTTCTGATGAGATCTATCTTGGGGAGAGGGAGAATCCAAATTGGACATCTGATACAAGGGCAATACAAGCCTTCAAAAAGTTTGGAACCAAGCTGCAAGAAATTGAAGGGAATATCAATGCGAGGAACAAGGATTCTTGTTTGCTAAACCGAACTGGGCCTATTGAGCTACCCTACAGTTTGCTCCTTCGTTCTAGTGAGGAAGGGTTGACATGTAGAGGAATTCCCAACAGTATCTCTATTTGA 2601 0.4364 MFGIFDKSKKIKGTLVLMPKNVLDLNAIVSARRGGVLGLPRSALGLVIDVAGQVVDGATAILSRNIHVQLISATKTNASGVGLLGEETFLQKHIPSLPTLGARQEAYSVEFDYDANFGIPGAFYIKNYMQCEFFLVSLTLEDIPNHGTIRFDCNSWVYNFKLYNNRHRIFFTNDTYLPGQTPAGLVKYRKEELENLRGDGSGERKEHERIYDYDVYNDLGNPDGGAPRPTLGGSAELPYPRRVRTGRKSTRTNRAAEKPAVDIYVPRDENFGHLKSSDFLTYGIKSLSQSVLPLFKSVIFDLNFTPNEFDSFDEVRGLYEGGIKLPTNIISQISPLPVLKEIFRTDGENVLQFPPPHVIRVSKSAWMTDVEFGREMIAGVNPNVIRLLQEFPPKSTLDVNGFGDQNSTLTKEHLEINLGGLTVDEALGAKRLFILDYHDAFMPYLEKINKLPSSKAYATRTILFLKDDGALTPLAIELSLPHPNGVKYGAESKVVLPAKEGAEGTIWLLAKAHVIVNDSGYHQLITHWLNTHATIEPFAIATNRHLSALHPINKLLYPHYRDTININALARASLINAEGIIEQSFLPGEYSLEISSVVYKNWVFPDQALPADLIKRGMAVEDPSAPHGVRLVLEDYPYAVDGLEIWDAIKKWVQDYVSLYYPSDDAVQKDTELQAWWKEVVQRAHADLSDKPWWPKMQTLEELIQSCSIIIWIASALHAAVNFGQYPYGGYILNRPTLSRRWIPENGTPEYDEMVKNPQKAYLRTITPKYQTLVDLSVIEILSRHASDEIYLGERENPNWTSDTRAIQAFKKFGTKLQEIEGNINARNKDSCLLNRTGPIELPYSLLLRSSEEGLTCRGIPNSISI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1539 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 176 IPR036392 GO:0005515
Lja3g1539 866 PANTHER LIPOXYGENASE 1 866 IPR000907 GO:0016702|GO:0046872
Lja3g1539 866 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Lja3g1539 866 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Lja3g1539 866 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 1 866 - -
Lja3g1539 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Lja3g1539 866 Gene3D - 500 865 - -
Lja3g1539 866 SMART LH2_4 9 173 IPR001024 GO:0005515
Lja3g1539 866 SUPERFAMILY Lipoxigenase 177 866 IPR036226 -
Lja3g1539 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 866 IPR013819 GO:0016702|GO:0046872
Lja3g1539 866 Pfam Lipoxygenase 184 848 IPR013819 GO:0016702|GO:0046872
Lja3g1539 866 Gene3D - 364 499 - -
Lja3g1539 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Lja3g1539 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Lja3g1539 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Lja3g1539 866 Gene3D - 177 274 - -
Lja3g1539 866 ProSiteProfiles PLAT domain profile. 46 171 IPR001024 GO:0005515
Lja3g1539 866 Gene3D - 275 363 IPR027433 -
Lja3g1539 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Lja3g1539 866 Gene3D PLAT/LH2 domain 1 176 - -
Lja3g1539 866 Pfam PLAT/LH2 domain 72 171 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1539 Lja-Chr3 16700236 16705940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1539 8 866 Acyl Lipid Metabolism Gene Families AT1G55020 56.078 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1539 K15718 - gmx:547835 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1539 3 16700236 16705940 Lja3g5007 3 92194495 92200976 PCT