Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3671 ATGGCATCATCACCGTCAAGGTTCCTCAACACCATGTCTCTGTCTCTCTTCATGTTGATCTTCCTCTGCTTCATTTCATCATCACCTTCTCTCTGTTCTGCATCTTTTCCCACCACCAATGATGATGATCTTCCCTTTTCTCCAAAACTTGATGCAGAGAAGCTCATAAGAGCGCTCAACCTGTTCCCAAAAGATTCTGTTAACACACTAGAGAATGAACCTCATGTTGTCTCTGGAAACCTTGTGGAGAAAAAGTTAACTTTTCCTAGTCTTGCTGCTTCTGAACCTTCTGTTGAAGACCTTGGCCATCGTGCAGGATACTATAGCCTTCCTCGTTCCAAAGCTGCAAGGTTGTTCTACTTTTTCTTTGAATCTAGGAACAGTAAGGATGACCCTGTTGTCATCTGGTTGACTGGAGGACCAGGATGCAGCAGTGAGCTAGCTATGTTTTATGAAAATGGTCCTTTTCATTTTGCCAAGAACTTGTCTCTCGTATGGAATGAATATGGATGGGACAAGGCTTCAAATATTCTGTTTGTAGACCAGCCCACTGGGACAGGTTTCAGCTACACTACTGATGAGAGTGACATTCGCCATGATGAAGAAGGTGTTAGCAATGATTTGTATGACTTTTTGCAGGCATTTTTCAAAGAGCACTCTCAGTTCACCAAGAATGACTTTTTTATTACTGGAGAGTCATACGCTGGACACTACATTCCAGCTCTTGCATCCAGAGTTCACCAAGGAAACAAAGCAAAAGAAGGAACCCACATAAATCTGAAGGGTTTTGCTATTGGTAATGGGTTAACCAATCCTGAAATTCAGTACAAGGCATATACAGACTATGCATTAGACATGGGACTAATTAACAAGACTGATTATGACAGAATCAACAAGTTGATCCCACCATGTGAGCAGGCCATAAAAACTTGTGGCACTAATGGTGGAGACACATGCGTATCTGCATTATATTCTTGCAATCGCATTTTCAACTCGATCTTGTCCATTGCTGGAAACATTAATTACTACGACATTAGAAAGAAATGTGAGGGAAGTTTGTGTTATGACTTTTCCAACATGGAGACATTCTTAAACAAGAAGGAAGTGAGGAATGCTTTAGGTGTTGGGGAGATGGACTTTGTTTCATGCAGCAGCACAGTGTATTCCGCCATGATGCAGGACTGGATGAGAAATCTGGAAGTAGGTATTCCTACTCTTCTTGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTAGGGAATTCAAGGTGGGTTGATGCCATGGAGTGGTCAGGTCAGAAAGATTTTGGGGCATCTCCAATAGTCCCATTTTTGGTTGATGGTGAAAAAGCAGGAGAGCTGAAAACCCATGGACCTCTTGCTTTCCTCAAGGTGAAGGAGGCTGGTCACATGGTCCCTATGGATCAACCAAAAGCTGCACTTGAGATGCTAAAAAGCTGGATGCAAGGGAAACTGACAATTAAAAAGGGTGGAGAGAATGTCTCTCCTAAATGA 1539 0.425 MASSPSRFLNTMSLSLFMLIFLCFISSSPSLCSASFPTTNDDDLPFSPKLDAEKLIRALNLFPKDSVNTLENEPHVVSGNLVEKKLTFPSLAASEPSVEDLGHRAGYYSLPRSKAARLFYFFFESRNSKDDPVVIWLTGGPGCSSELAMFYENGPFHFAKNLSLVWNEYGWDKASNILFVDQPTGTGFSYTTDESDIRHDEEGVSNDLYDFLQAFFKEHSQFTKNDFFITGESYAGHYIPALASRVHQGNKAKEGTHINLKGFAIGNGLTNPEIQYKAYTDYALDMGLINKTDYDRINKLIPPCEQAIKTCGTNGGDTCVSALYSCNRIFNSILSIAGNINYYDIRKKCEGSLCYDFSNMETFLNKKEVRNALGVGEMDFVSCSSTVYSAMMQDWMRNLEVGIPTLLEDGIKVLVYAGEEDLICNWLGNSRWVDAMEWSGQKDFGASPIVPFLVDGEKAGELKTHGPLAFLKVKEAGHMVPMDQPKAALEMLKSWMQGKLTIKKGGENVSPK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3671 512 Pfam Serine carboxypeptidase 100 498 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 SUPERFAMILY alpha/beta-Hydrolases 102 499 IPR029058 -
Lja3g3671 512 PANTHER SERINE CARBOXYPEPTIDASE 3 39 501 - -
Lja3g3671 512 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 501 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 Gene3D alpha/beta hydrolase 80 509 IPR029058 -
Lja3g3671 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 215 240 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 179 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 190 IPR001563 GO:0004185|GO:0006508
Lja3g3671 512 ProSitePatterns Serine carboxypeptidases, serine active site. 229 236 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3671 Lja-Chr3 72867512 72871391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3671 K16298 - gmx:100785987 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3671 3 72867512 72871391 Lja3g3671 3 72867512 72871391 ECH
Lja3g3671 3 72867512 72871391 Lja3g0895 3 9108873 9113449 PCT
Lja3g0896 3 9124558 9127582 Lja3g3671 3 72867512 72871391 PCT