Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2683 ATGGCATTCAACGCATTTTTACTTCTTGTCCTCTTCTTCAATCTTACTAGTACATTATCATCGGTTACATTTGCAACATCTGCTGCATCCACTCTTGATGATGCCTCAATGAGACGAAGCAATTTTCCCAAAGGCTTCATTTTTGGGACAGCATCTGCTTCATACCAGTATGAAGGTGCAGCAAAAGAAGGCGGTAGAGAACCAAGTATATGGGATACCTTCAGCCATAAATATCCAGAGAAAATAACGGATAGAAGCACCGGAGATGTCTCGATTGACCAGTATCACCGCTACAAGGAGGATGTTGAACTCATGAAGTCTTTGAATTTGGATGCTTACAGATTTTCCATCTCTTGGTCCAGAATCCTCCCAAAAGGAAAGCTCAGTGGAGGTATCAACCAAGAAGGAATCAAATATTATAACAATCTCATCGACGAACTGCTAGCTAATGGTCTACAACCATTTGTAACACTTTTTCATTGGGATCTTCCCCAAACTCTGGAAGATGAGTATGGTGGTTTCTTAAGTCCTGAAATTGTAGAGGATTTTCAAGATTATGTGGAGCTATGTTTCAAGGAATTTGGAGATAGAGTGAAGCATTGGATTACTTTGAATGAACCATGGGGTTACAGTAGCAATGGCTATGTACTTGGGGCATTTGCACCGGGTCGATGTTCTAAATGGGTTAATCCAAATTGCACCGGTGGTGATTCAGGGATAGAGCCATATTTGGTTTCACACCACCTACTTCTTGCTCATGCAAAAGCTGTTCAAGTGTACAAGAAGAAATATCAGGCATCTCAAAAGGGTATTATAGGAATAACATTGGTGACTCATTGGTTCGAACCATTTTCAGATAACAAATATGATCATGACGCTGCTGGACGAGCAGTTGACTTCATGTTTGGATGGTTTATGGATCCATTGACATTTGGAAACTATCCACAGAGTATGCGTTCACTAGTCGGAAGCAGATTACCAAAGTTTTCTAAGAAGCAAGCTAGTCTAGTTAAAGGTTCATTTGATTTTCTTGGACTAAACTATTACACCACTTATTATGCTGCCAACGCATCTTCTGGAAGCAATGATAGACCCTATTTCTTCACGGACTCTCTTGCTAATCTTACAACTGAGCGTAACGGGAATCCTATAGGTCAAAGGGCCGCTTCAAGTTGGTTATATGTTTATCCAAAAGGAATTCAAGAATTGTTGCTCTATATCAAGAAAAAGTACAACAACCCTCTAATCTACATTACTGAAAATGGTATTGATGAGTTCAATGATCCAACACTATCATTAGAGGAAGCTCTCATAGACACCTACAGAATTGACTATCATTATCGGCATCTATTTTATCTTCAATCTGCAATAAGGGATGGGGCAAACGTCAAAGGATATTTCGCATGGTCATTGCTGGACAATTATGAATGGAATTCAGGTTATACAGTGCGATTTGGAATAAATTTTGTGGATTACAAAAATGGATTGAAGAGATACCAAAAGCTATCCGCAAAATGGTTCACGAATTTTCTCAAAAGACATTAG 1545 0.3922 MAFNAFLLLVLFFNLTSTLSSVTFATSAASTLDDASMRRSNFPKGFIFGTASASYQYEGAAKEGGREPSIWDTFSHKYPEKITDRSTGDVSIDQYHRYKEDVELMKSLNLDAYRFSISWSRILPKGKLSGGINQEGIKYYNNLIDELLANGLQPFVTLFHWDLPQTLEDEYGGFLSPEIVEDFQDYVELCFKEFGDRVKHWITLNEPWGYSSNGYVLGAFAPGRCSKWVNPNCTGGDSGIEPYLVSHHLLLAHAKAVQVYKKKYQASQKGIIGITLVTHWFEPFSDNKYDHDAAGRAVDFMFGWFMDPLTFGNYPQSMRSLVGSRLPKFSKKQASLVKGSFDFLGLNYYTTYYAANASSGSNDRPYFFTDSLANLTTERNGNPIGQRAASSWLYVYPKGIQELLLYIKKKYNNPLIYITENGIDEFNDPTLSLEEALIDTYRIDYHYRHLFYLQSAIRDGANVKGYFAWSLLDNYEWNSGYTVRFGINFVDYKNGLKRYQKLSAKWFTNFLKRH* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2683 514 Gene3D Glycosidases 26 513 - -
Lja3g2683 514 Pfam Glycosyl hydrolase family 1 40 513 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Lja3g2683 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 1 513 - -
Lja3g2683 514 SUPERFAMILY (Trans)glycosidases 33 512 IPR017853 -
Lja3g2683 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Lja3g2683 514 PANTHER GLYCOSYL HYDROLASE 1 513 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2683 Lja-Chr3 38487082 38493261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2683 8 507 Glycoside Hydrolase AT5G42260 56.487 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2683 - K01188 gmx:100811884 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2683 3 38487082 38493261 Lja3g2683 3 38487082 38493261 ECH
Lja3g0619 3 6125756 6130375 Lja3g2683 3 38487082 38493261 ECH
Lja3g2683 3 38487082 38493261 Lja3g0616 3 6096654 6100756 PCT