Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0616 ATGGCATCATCATGCAAACGCTTTTACCTTTTAGGACTCGTTGCCTTCGTTCTTGTGATTACCAACTCGAATATTGTTCATTGCACTGAAAATGCTGCTCCCGTTCTTGATCTTGCTTCTTTCAACCGAAACAGTTTCCCTCCCGGCTTCATCTTTGGAGCTGGATCCTCCTCATACCAATTTGAAGGTGGTGCAATGGATGGTGGTAGAGGGCCAAGTATATGGGATACCTTCACCCATAAATATCCAGAAAAGATAGAGGATAGAAGCAATGGAGATGTGGCCATTGACACATATCACAATTACAAGGAAGATGTTAAGATGATGAAAGATATGAACTTAGATTCATACAGATTCTCCATATCTTGGTCAAGAATATTGCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAACGAGCTATTGGCTAATGGTCTAGAACCATTTGTGACCCTTTTCCATTGGGATCTTCCGCAAGCTTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCTCATAGTAAAAGATTTTCGAGACTATGTGGAGCTTTGCTTCAAGGAATTTGGCGATAGGGTGAAGCTTTGGGTTACTTTGAATGAGCCATGGGGTTATAGCCAAAATGGCTACGCAGTGGGGAGGTTTGCACCAGGTCGTTGTTCTGCATGGATGAACACAAATTGCACTGGTGGTGATTCATCCATAGAACCTTATTTGGTTTCACACTACCAACTTCTTGCTCATGCAGCAGCTGTTCGTGTATACAAGACCAAATATCAGGCATCTCAGAAGGGTTTCATAGGCATAACCTTGGTATCTCATTGGTACCTACCTCTCTCCGACACCAGATATGATCAAAAGGCTGCTGAAAGAGCAATGGACTTCATGTATGGATGGTTTATGGATCCACTAACATCCGGAGAGTACCCCAAAAGCATGAGACTTCTTGTTGGAGCACGATTACCAAAGTTCACAGCAGAGCAAGCTAGGCTACTTAAAGGTTCATATGATTTTATTGGCCTGAACTATTACACTTCACTCTATGCCACAGATGCACCTCAACTAAGAAATGCCAAACCTAGCTACGTAACAGATTCATTGGTCAATCCTGCATTTGAGCGTGATGGCAAACCCATAGGTATTAAGGTTGCTTCTGATTGGTTATACGTTTATCCAAGAGGAATCGAAGATCTTTTGTTATACACCAAGGAAAAGTACAACAACCCTTTGATTTACATCACTGAAAATGGTATAAATGAATATGATGATCCAACACTATCAGTTGAGGAATCGCTCATGGATATTTTTCGAATTGATTACCATTATCGTCATCTCTTTTATCTTCGATGTGCAATTAGGAATGGTGTGAATGTCAAAGGGTATTATATATGGTCTTTGTTCGACAACTTTGAGTGGTCTTCTGGTTACACTGCACGATTTGGAATGACCTTTGTGGATTACAAAAATGGCTTGAAAAGATATGAGAAACTTTCTGCATTGTGGTTCAAGGACTTCCTCAAAGAAGAAACTAGACTTTATGCTGAATAA 1575 0.4051 MASSCKRFYLLGLVAFVLVITNSNIVHCTENAAPVLDLASFNRNSFPPGFIFGAGSSSYQFEGGAMDGGRGPSIWDTFTHKYPEKIEDRSNGDVAIDTYHNYKEDVKMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNFINELLANGLEPFVTLFHWDLPQALEDEYGGFLSPLIVKDFRDYVELCFKEFGDRVKLWVTLNEPWGYSQNGYAVGRFAPGRCSAWMNTNCTGGDSSIEPYLVSHYQLLAHAAAVRVYKTKYQASQKGFIGITLVSHWYLPLSDTRYDQKAAERAMDFMYGWFMDPLTSGEYPKSMRLLVGARLPKFTAEQARLLKGSYDFIGLNYYTSLYATDAPQLRNAKPSYVTDSLVNPAFERDGKPIGIKVASDWLYVYPRGIEDLLLYTKEKYNNPLIYITENGINEYDDPTLSVEESLMDIFRIDYHYRHLFYLRCAIRNGVNVKGYYIWSLFDNFEWSSGYTARFGMTFVDYKNGLKRYEKLSALWFKDFLKEETRLYAE* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0616 524 Pfam Glycosyl hydrolase family 1 43 518 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 SUPERFAMILY (Trans)glycosidases 34 516 IPR017853 -
Lja3g0616 524 PRINTS Glycosyl hydrolase family 1 signature 344 358 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 PRINTS Glycosyl hydrolase family 1 signature 420 428 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 PRINTS Glycosyl hydrolase family 1 signature 464 481 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 PRINTS Glycosyl hydrolase family 1 signature 443 454 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 PRINTS Glycosyl hydrolase family 1 signature 488 500 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 Gene3D Glycosidases 31 517 - -
Lja3g0616 524 PANTHER GLYCOSYL HYDROLASE 6 521 IPR001360 GO:0004553|GO:0005975
Lja3g0616 524 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 6 521 - -
Lja3g0616 524 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 50 64 IPR033132 -
Lja3g0616 524 ProSitePatterns Glycosyl hydrolases family 1 active site. 420 428 IPR018120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0616 Lja-Chr3 6096654 6100756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0616 7 520 Glycoside Hydrolase AT5G44640 52.233 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0616 - K01188 gmx:100784723 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2683 3 38487082 38493261 Lja3g0616 3 6096654 6100756 PCT