Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0619 ATGGCATTCAGTGACTATTATTTATCTCTTTGGCTCATCAACATTGGTGTCTTCACCCTTGTTATTAGCTCTTCTGTTACAATAGTTGAAGCTGTTGTAATTGCTCCTACTCTGGTTGATGTTGCTTCTCTAAACCGGACCAGTTTTCCAGCAGGTTTCATCTTCGGCACTGCCTCCTCCTCCTACCAGTACGAAGGTGCTGCAAATGAAGGTGGCAGAGGACCAAGTATATGGGATACCTTTACTCACAAAAACCCAGAAACGATATTGGATAGAAGCAATGGAGATGTAGCTGTTGATCAGTATCATCGCTATAAGGAAGATGTTCAGATCATGAAGTATATGAATACAGATGCTTACAGATTCTCCATCTCTTGGTCAAGGATATTGCCAAAAGGAAAAATAAGTGCGGGTATAAACCAAGAAGGAATCAAGTATTACAACAACCTGATCAATGAGCTACTAGACAATGGTCTTCAACCATTTGTGACACTTTTCCATTGGGATCTTCCCCAAGCCTTACAAGATGAGTATAGTGGCTTCTCGAGTCCTCATATCATAAATGGTTTTCAAGACTACGCAGAGCTTTGCTTCAAGGAATTTGGAGATAGAGTGAAGCATTGGATCACTCTTAATGAGCCATGGAGTTACAGTTTGGGTTTTAATGAACCTTATGTGACCTCACACTATCAACTCCTTGCTCATGCAGCTGCTGTCAAAATTTATAAAACCAAATATCAGGCATCTCAGAAAGGTTTCATAGGCATCACCTTAAACTCTCACTGGTTCTTGCCATTCTCAAATGACAAATCCGACCATCATGCCGCCCAGCGTGCTCTTGATTTCATGTTTGGATGGTTTATGCAGCCACTGACAACAGGAAAGTATCCAAAAACCATGATGTCTTTGGTGGAAAATCGATTACCAAACTTCTCTGAGGAGCAATCCAAGCTACTTGCTGGCTCATTTGATTTTATTGGACTAAATTACTACACTACTAATTATGCTGCACATATACCTCATCCAAATAATGACAAAAGCAAACCGAGCTACTACACAGATTCTCATGCCAACTTAACAACTGAGCGTAACGGGACACTAATTGGACCAAGGGCTGCTTCAGATTGGCTATATGTTTATCCAAAGGGGATTCGAGAACTGTTGTTGTACATAAAGAGAAAGTATAACAACCCTTTGATTTACATAACAGAAAATGGCATGGATGAATTCAATGATCCAAAATTATCACTTGAAGAGGCACTTAAGGATACTTACAGAATTGATTACTTCTACCGTCATCTTTATTATATTTCAGCTGCAATCAAGAATGGTGTGAAAGTACAAGGATACTTTGCATGGTCACTTTTGGACAACTTTGAATGGAATTCTGGCTACACCGTGCGTTTTGGAATTAACTTCGTCGATTACAAGGATAATTTGAAAAGACATCAAAAGCTCTCTGCCCACTGGTTTAGGAACTTTCTTAAAAAATATTAA 1497 0.3941 MAFSDYYLSLWLINIGVFTLVISSSVTIVEAVVIAPTLVDVASLNRTSFPAGFIFGTASSSYQYEGAANEGGRGPSIWDTFTHKNPETILDRSNGDVAVDQYHRYKEDVQIMKYMNTDAYRFSISWSRILPKGKISAGINQEGIKYYNNLINELLDNGLQPFVTLFHWDLPQALQDEYSGFSSPHIINGFQDYAELCFKEFGDRVKHWITLNEPWSYSLGFNEPYVTSHYQLLAHAAAVKIYKTKYQASQKGFIGITLNSHWFLPFSNDKSDHHAAQRALDFMFGWFMQPLTTGKYPKTMMSLVENRLPNFSEEQSKLLAGSFDFIGLNYYTTNYAAHIPHPNNDKSKPSYYTDSHANLTTERNGTLIGPRAASDWLYVYPKGIRELLLYIKRKYNNPLIYITENGMDEFNDPKLSLEEALKDTYRIDYFYRHLYYISAAIKNGVKVQGYFAWSLLDNFEWNSGYTVRFGINFVDYKDNLKRHQKLSAHWFRNFLKKY* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0619 498 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 12 497 - -
Lja3g0619 498 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 53 67 IPR033132 -
Lja3g0619 498 Gene3D Glycosidases 31 497 - -
Lja3g0619 498 Pfam Glycosyl hydrolase family 1 47 497 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 SUPERFAMILY (Trans)glycosidases 35 496 IPR017853 -
Lja3g0619 498 PRINTS Glycosyl hydrolase family 1 signature 423 434 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 PRINTS Glycosyl hydrolase family 1 signature 400 408 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 PRINTS Glycosyl hydrolase family 1 signature 468 480 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 PRINTS Glycosyl hydrolase family 1 signature 322 336 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 PRINTS Glycosyl hydrolase family 1 signature 444 461 IPR001360 GO:0004553|GO:0005975
Lja3g0619 498 PANTHER GLYCOSYL HYDROLASE 12 497 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0619 Lja-Chr3 6125756 6130375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0619 17 497 Glycoside Hydrolase AT5G44640 51.479 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0619 - K01188 lja:Lj3g3v3281600.1 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0619 3 6125756 6130375 Lja3g0619 3 6125756 6130375 ECH
Lja3g0619 3 6125756 6130375 Lja3g2683 3 38487082 38493261 ECH