Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1078 ATGACTTGGAAAAGCAGGGGAGAGGCATCTTCTAGAAACGTTATACACCAGAGATGGGCACTTTTCTTGTGCCTTGGAAGCTTCTGTACTGGGATGCTATTCACTAATAGGATATGGAGTGTTCCTGAATCTAAAGGACTTGCAAGACCAACAGCTACAGAAGCTGATCAATTGAATGTAGTTTCAGAGGGTTGCAATTCGAGAGTTTTGCAAGAGATGGAAATGAAGCGCGAATATAGTGAAGATTTCAAGAGTCATAACTCCATACAAAATTTGGACAAGACTATTTCAAATTTAGAGATGGAATTGGCTGCTGCAAGGGCAACTCAAGAGTCTGTAAGAAGTGGTGCTCCTGTTCCAGAAGATATAAGGATTAGTGATCAGTCACCGCGTAAGAGAAAGTACCTTATGGTGATAGGTATTAATACTGCATTTAGCAGCAGGAAAAGAAGAGACTCGGTTCGGGAAACCTGGATGCCGCAAGGTGAGAAAAGAAAGAAGCTAGAAGAAGAGAAGGGCATTATCTTCCGCTTTGTAATTGGACATAGTGCTACATCAGGAGGTATTCTAGACAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTTGAAGGATACCTTGAATTGTCCGCAAAGACAAAAACATACTTTGCCACCGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGCAACACTGGGGGAAACTCTAGTTAGACACCGATCAAAGCCGCGGGTATACATTGGATGCATGAAATCCGGTCCTGTCCTATCCCAAAAAGGGGTAAGGTATCATGAACCTGAGTATTGGAAATTTGGCGAATCTGGAAACAAGTACTTCCGCCATGCCACAGGGCAGTTATATGCCATTTCAAACGATTTGGCAACCTACATATCAATGAACCAGAATGTTCTTCACAAGTATGCCAATGAGGATGTGTCACTAGGATCTTGGTTTATTGGACTTGATGTGGAGCATATTGATGATCGAAGACTTTGCTGCGGCACTCCTCCAGATTGTGAATGGAAGGCCCAGGCAGGCAACATTTGTGTTGCTTCATTTGATTGGAGCTGCAGTGGAATATGCAGGTCAGCTGATAGGATTAAAGAGGTACATAGGAGGTGTGGGGAAGGTGAGAATGCTTTGTGGAGTGCCTCTTTCTAA 1215 0.4288 MTWKSRGEASSRNVIHQRWALFLCLGSFCTGMLFTNRIWSVPESKGLARPTATEADQLNVVSEGCNSRVLQEMEMKREYSEDFKSHNSIQNLDKTISNLEMELAAARATQESVRSGAPVPEDIRISDQSPRKRKYLMVIGINTAFSSRKRRDSVRETWMPQGEKRKKLEEEKGIIFRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVNLWDADFYVKVDDDVHVNIATLGETLVRHRSKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGESGNKYFRHATGQLYAISNDLATYISMNQNVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSASF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1078 404 Coils Coil 89 109 - -
Lja3g1078 404 Pfam Domain of unknown function (DUF4094) 17 108 IPR025298 -
Lja3g1078 404 Pfam Galactosyltransferase 149 346 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja3g1078 404 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 4-RELATED 7 396 - -
Lja3g1078 404 Gene3D - 126 349 - -
Lja3g1078 404 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 396 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1078 Lja-Chr3 11195534 11199704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1078 1 404 Glycosyltransferase AT1G05170 77.206 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1078 K20855 - gmx:100794838 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1078 3 11195534 11199704 Lja3g1078 3 11195534 11199704 ECH
Lja3g1078 3 11195534 11199704 Lja4g4260 4 76117111 76121776 ECH
Lja3g3495 3 69152844 69157463 Lja3g1078 3 11195534 11199704 PCT