Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4260 ATGTCTATGAAGAGCAGCAAGGTGGGGGCTGTGGAATTTGCTGCAAGGAATGCTGTCCTGCATAGGAAATGGGCTCTTTTGCTTTGTGTGGCAAGCTTCTGTGCTGGAATGTTCTTCACCAACAGGATGTGGTCGATGCCTGAATATAGAGAAATTTCCAAGACCTCTAGTGAGATTGAACGAATAAAATTAAACACTGATGGTTGTAATCTAAATCTAGTTGTAAAGCCTGAATCCAACTACAGTCATGTGGAAATTTCAAATACGCGAAAGATTATCACGAAACCAAGAATCTCACAGAAAGTTCAATCTTCTCCAAGGAAAAAATGTTTCATGGTTATAGGTATCAATACAGCATTTAGTAGCCGGAAGCGAAGAGATTCTATTCGTGAAACTTGGATGCCAGGAGCCGAGGAAAGAAAGAAATTGGAGGAAGAAAAGGGCATAATCATACGTTTTGTTATTGGTCACAGTTCTACATCTGGTGGCATTCTTGACAGAGCTATTGAAGCAGAGGAGAAGCTTCATGCCGACTTCATGAGGCTGGACCACGTTGAGGGCTACCTGGAACTATCAGCTAAGACGAAAACCTATTTTTCCACTGCCCTTGCCTTGTGGGATGCAGAATATTATATCAAAGTTGATGATGATGTTCATGTGAATTTAGCCACACTTGGATCCATTCTGACTATGCACCGCCAGAAACCTCGAGTATATATCGGGTGCATGAAATCCGGCCCCGTCCTTGCTCAGAAGGGAGTGAAATATCATGAACCAGAATACTGGAAATTTGGCGAGGTGGGAAATAAGTACTTCCGTCACGCTACAGGACAACTATATGCCATTTCACAAGATTTGGCTACTTATATATCCATAAATCGGGACGTGTTGCATAAATATGCTAATGAAGATGTTTCACTGGGTGCTTGGTTAATTGGTTTAGATGTGGAACATATTGATGATAGGAGAATGTGTTGTGGTACATCCCCTGATTGCGAGTGGAAGGCTCAGGCAGGTAATATCTGTGCTGCTTCATTTGATTGGAGATGCAGCGGAATTTGCAGGTCTGTTGAGAGGATGAAGGAGGTTCACCAGCGTTGCGGGGAGGATGAAAATGCACTGGGGGCTGCAACTTTCTGA 1140 0.4316 MSMKSSKVGAVEFAARNAVLHRKWALLLCVASFCAGMFFTNRMWSMPEYREISKTSSEIERIKLNTDGCNLNLVVKPESNYSHVEISNTRKIITKPRISQKVQSSPRKKCFMVIGINTAFSSRKRRDSIRETWMPGAEERKKLEEEKGIIIRFVIGHSSTSGGILDRAIEAEEKLHADFMRLDHVEGYLELSAKTKTYFSTALALWDAEYYIKVDDDVHVNLATLGSILTMHRQKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEVGNKYFRHATGQLYAISQDLATYISINRDVLHKYANEDVSLGAWLIGLDVEHIDDRRMCCGTSPDCEWKAQAGNICAASFDWRCSGICRSVERMKEVHQRCGEDENALGAATF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4260 379 Gene3D - 100 326 - -
Lja4g4260 379 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 10 94 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja4g4260 379 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 100 371 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja4g4260 379 Pfam Domain of unknown function (DUF4094) 21 94 IPR025298 -
Lja4g4260 379 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1-RELATED 100 371 - -
Lja4g4260 379 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1-RELATED 10 94 - -
Lja4g4260 379 Pfam Galactosyltransferase 124 321 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4260 Lja-Chr4 76117111 76121776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4260 12 379 Glycosyltransferase AT1G05170 64.589 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4260 K20855 - gmx:100810168 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4260 4 76117111 76121776 Lja4g4260 4 76117111 76121776 ECH
Lja3g1078 3 11195534 11199704 Lja4g4260 4 76117111 76121776 ECH