Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1744 ATGTCGACCTCTACCATAAACGGCTTCTACCTCTCTTCTATCTCCCCTGCCAAAACTTCTCTCAAGAGGGTCACATTACGTCCCTTAGTCGTTGCTTCTGCTTCTTCTCCTTCTTCTTCATCTTCCTCTTCTTTCCCTTCTCTTATCCAAGACAGGCCTGTCTTTGCTGCCCCTGCTCCTATCATCCCCACTTTGGATATGGGAAAGAACTATGAGGAAGCTATTGAAGAACTCCAGAAATTGTTGAGGGAGAAGAATGAGTTGAAGGCCACAGCAGCTGAAAAAGTTGAACAGATAACAGCTCAGCTAGGGACAACATCATCTGATGGCATCCCATCATCTGAAGCCTCAGACAGGATCAAAACTGGTTTCCTTTACTTCAAGAAAGAGAAATATGACAAAAATCCAGCTTTGTATGGAGAACTTGCCAAAGGCCAGAGCCCACCGTATATGGTGTTTGCTTGCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTGGACTTCCAGCCTGGAGAGGCCTTTGTGGTCAGAAATGTTGCTAACATGGTTCCACCATATGACCAGGCAAAATTCAGTGGATCTGGGGCTGCCATTGAGTATGCAGTTCTTCATCTCAAGGTGTCCAACATTGTAGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTCCCATTTGATGGAACCACCTCTACTGATTTTATTGAGGACTGGGTCAGCATTGGTTTACCTGCAAAGGCCAAGGTGAAGGCAAAACATGGGGATGCACCTTTTGGAGAGCTCTGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCCCTTGGAAACCTGCTAAGCTACCCATTTGTGAGAGAGGGCCTTGTGAACAAAACTTTGGCACTGAAAGGAGGATACTATGACTTTGTTAAGGGATCATTTGAGCTCTGGAGCCTCCAGTTTGACCTTGCTTCTTCTTTCTCCGTATGA 975 0.4605 MSTSTINGFYLSSISPAKTSLKRVTLRPLVVASASSPSSSSSSSFPSLIQDRPVFAAPAPIIPTLDMGKNYEEAIEELQKLLREKNELKATAAEKVEQITAQLGTTSSDGIPSSEASDRIKTGFLYFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQAKFSGSGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTTSTDFIEDWVSIGLPAKAKVKAKHGDAPFGELCTHCEKEAVNVSLGNLLSYPFVREGLVNKTLALKGGYYDFVKGSFELWSLQFDLASSFSV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1744 324 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 155 162 IPR015892 GO:0004089|GO:0008270|GO:0015976
Lja2g1744 324 PANTHER CARBONIC ANHYDRASE 1 324 IPR001765 GO:0004089|GO:0008270
Lja2g1744 324 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 199 219 IPR015892 GO:0004089|GO:0008270|GO:0015976
Lja2g1744 324 Pfam Carbonic anhydrase 150 308 IPR001765 GO:0004089|GO:0008270
Lja2g1744 324 SUPERFAMILY beta-carbonic anhydrase, cab 117 319 IPR036874 GO:0004089|GO:0008270
Lja2g1744 324 Gene3D Carbonic anhydrase 104 324 IPR036874 GO:0004089|GO:0008270
Lja2g1744 324 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 1 324 - -
Lja2g1744 324 Coils Coil 68 102 - -
Lja2g1744 324 CDD beta_CA_cladeB 123 312 IPR045066 GO:0004089|GO:0008270
Lja2g1744 324 SMART Pro_CA_2 143 313 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1744 Lja-Chr2 17542227 17546325 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1744 K01673 - gmx:100781868 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1744 2 17542227 17546325 Lja1g5656 1 99447969 99450797 ECH
Lja2g1744 2 17542227 17546325 Lja2g1744 2 17542227 17546325 ECH
Lja2g0975 2 9147559 9156616 Lja2g1744 2 17542227 17546325 ECH