Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0308 ATGGAGGTTGGCGGCGAAGTTTCACCGGAAACCGCGATATCTCGATGGAAGTTGGGGCTATCGCAGCAGTATCAGCACATGCTCGACAAGACCACCCCGCACGTACTACGGCGTTGGGTTGGTTGCTTGGTGGTGGCCTCCATCTACGTCCTCCGTGTCTACCTGGTGGAGGGCTTCTACATCGTCTCCTACGCTCTCGGCATCTACATCCTCAACCTCCTCATCGGTTTCCTCTCCCCTCAGGTCGATCCCGAGGTTTACGACGACGGCCCCACCCTCCCTACCTCCGGATCCGATGAGTTCCGCCCTTTCGTTCGCCGTCTTCCCGAGTTCAAATTCTGGTACTCGATCACAAAGGCCTTTTGCATTGCATTTGTGATGACTTTCTTTAGTGCGTTTGATGTTCCTGTCTTCTGGCCAATACTTCTCTTCTATTGGGTGGTCCTATTCACGCTCACTATGAGGAGACAGATATCCCACATGATCAAATACAAATATGTACCGTTCTCATTTGGGAAGCAGCGCTATACTGGAAAGAGAGCATCAGCTGAAAGCAAGAGCCTTCCGGAGGACTGA 576 0.5243 MEVGGEVSPETAISRWKLGLSQQYQHMLDKTTPHVLRRWVGCLVVASIYVLRVYLVEGFYIVSYALGIYILNLLIGFLSPQVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAESKSLPED* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0308 191 PANTHER PROTEIN RER1 7 188 IPR004932 GO:0016021
Lja2g0308 191 Pfam Rer1 family 20 177 IPR004932 GO:0016021
Lja2g0308 191 PANTHER PROTEIN RER1C 7 188 - -
Lja2g0308 191 PIRSF AtER_Rer1p 2 187 IPR004932 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0308 Lja-Chr2 2793607 2795902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0308 24 184 Miscellaneous Gene Families AT4G39220 75.460 2.58e-91 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0308 - - gmx:100805147 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0308 2 2793607 2795902 Lja2g0308 2 2793607 2795902 ECH
Lja1g2302 1 26725334 26727874 Lja2g0308 2 2793607 2795902 ECH
Lja2g0308 2 2793607 2795902 Lja4g3379 4 63884904 63888799 PCT