Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3379 ATGGATGCGGAGGCGGAGGCTACATCCCCGGCGGCCGCCGTATCGCGGTGGAAGTTCGAGGTGTCACGGCGGTACCAACACCTCCTGGACAAAGCGACGCCGTACGTGGCGAAGCGGTGGTTGGGGTGCCTGGTGGTGGCGCTGGTGTACGCGCTCCGCGTCTACATGGTGGAAGGATTCTACATCGTTTCCTACGGTCTCGGCATTTACATCCTCAACCTTCTGATCGGCTTCCTTTCCCCTCAGGTCGATCCCGAGGTTCAAGATTCCGGTGGCCCCTCCCTCCCCACCTCCACTTCCGACGAGTTTCGCCCCTTCGTTCGCCGCCTCCCGGAGTTCAAGTTCTGGTACTCAATCACGAAGGCATTTTGCATTGCATTTGTGATGACTTTCTTTAGTGCCTTTGATGTTCCTGTCTTCTGGCCAATTCTCCTCTTCTACTGGGTGACCCTCTTCACTCTTACTATGAGGAGACAAATAGCTCACATGATCAGATACAAATATGTACCATTTTCATTTGGAAAGATGCGGTATGATGGAAAGCGGGCATCAGCAGAAAGCACAACCCTTTCAGATGACTGA 582 0.5395 MDAEAEATSPAAAVSRWKFEVSRRYQHLLDKATPYVAKRWLGCLVVALVYALRVYMVEGFYIVSYGLGIYILNLLIGFLSPQVDPEVQDSGGPSLPTSTSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAESTTLSDD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3379 193 PANTHER PROTEIN RER1 3 188 IPR004932 GO:0016021
Lja4g3379 193 PIRSF AtER_Rer1p 1 189 IPR004932 GO:0016021
Lja4g3379 193 Pfam Rer1 family 18 178 IPR004932 GO:0016021
Lja4g3379 193 PANTHER PROTEIN RER1C 3 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3379 Lja-Chr4 63884904 63888799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3379 2 186 Miscellaneous Gene Families AT4G39220 67.204 2.96e-92 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3379 - - ahf:112799570 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3379 4 63884904 63888799 Lja4g3379 4 63884904 63888799 ECH
Lja2g0308 2 2793607 2795902 Lja4g3379 4 63884904 63888799 PCT