Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0277 ATGAAAATCAAAACGGTTAGAGGAAATTGGAGTTGGAGAACGAACAAGATCGCGTTCCCTTCTGTTTTCCTCTTATGCATCTTCTTCTTCCTCGCTGGATTCTTCGGTTCTACTCTCTTCTTTCAGTATCACTCTCAGGAAGATGAGCATGGACTGAGGCAGATTCAGAGGCCGAGGACGACGAGGTTGCTTGAGAATTTGACTGAGAAGGAGACGGAGTCGCATTTGTTGCCTGCTGGAGAGACCGGTGACAATTTCATCACAACGATTCCATTCCAGGTTTTGAGCTGGAACCCTCACGCTCTATATTTCCCTAATTTTGCAACTGCAGAACAATGTGAAAGCATAATTGAAACGGCAAAGGAAGGACTGAAACCATCAACATTGGTGTTACGTGTGGGAGAAACAGATGAGAGTACAACGGGAATCAGAACAAGCTCTGGTGTCTTTATTAGCGCTTTTGAAGATAAAACGGGGGTTTTAGATGTCATTGAGGAGAAAATTGCAAGAGCAACAAAAATTCCCAGGACTCATGGAGAGGCATTTAATGTCCTCCGCTATAAGGTCGGGCAGAAATACAGTTCTCATTATGATGCACTCCATCCTGATATATATGGTCCACAAAAGAGCCAAAGGATGGCTTCATTTTTGCTGTATTTATCTGATGTTCCGGAAGGTGGGGAGACCATGTTTCCATTTGAGAATGGATTGAATATGGACGGTAGCTATTATTATGAGAAATGTATTGGTCTAAAAGTAAAGCCACGCAAGGGGGATGGACTTCTATTTTATTCATTGTTCCCTAATGGTACAATTGATCCGGTTAGTATTTTCGTTCCATCATCATTTTTAATTGCTCTCCTGGGTAAGACTGAAAATGGAACTATTTTACGAATTAAAAGTGTCACGATTAAAACTGCGACCTCACCCCCGCAGTGCAGATATATAAACTTCGCTCTACGCGGTCCATCAAATAAAGATAATTCAAGGGTATACACTTAA 1002 0.4182 MKIKTVRGNWSWRTNKIAFPSVFLLCIFFFLAGFFGSTLFFQYHSQEDEHGLRQIQRPRTTRLLENLTEKETESHLLPAGETGDNFITTIPFQVLSWNPHALYFPNFATAEQCESIIETAKEGLKPSTLVLRVGETDESTTGIRTSSGVFISAFEDKTGVLDVIEEKIARATKIPRTHGEAFNVLRYKVGQKYSSHYDALHPDIYGPQKSQRMASFLLYLSDVPEGGETMFPFENGLNMDGSYYYEKCIGLKVKPRKGDGLLFYSLFPNGTIDPVSIFVPSSFLIALLGKTENGTILRIKSVTIKTATSPPQCRYINFALRGPSNKDNSRVYT* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0277 333 SMART p4hc 99 282 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lja2g0277 333 PANTHER TYPE 1 PROLY 4-HYDROXYLASE 8 278 - -
Lja2g0277 333 Pfam 2OG-Fe(II) oxygenase superfamily 182 265 IPR044862 -
Lja2g0277 333 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 8 278 IPR045054 -
Lja2g0277 333 Gene3D q2cbj1_9rhob like domain 92 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0277 Lja-Chr2 2554320 2560104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0277 K00472 - gmx:100776115 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0277 2 2554320 2560104 Lja4g3416 4 64574213 64578440 ECH
Lja2g0277 2 2554320 2560104 Lja2g0277 2 2554320 2560104 ECH
Lja2g0277 2 2554320 2560104 Lja5g0429 5 3763225 3765952 PCT