Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3416 ATGAAAGCCAAAACAGTGAAAGGAAATTTGAGCTCAAGATCAAACAAGCTCACCTTCCCTTACATCTTCCTCATATGCATCTTCTTCTTCCTCGCTGGATTCTTCGGTTCCACTCTCTTCTCTCACTCTCAGGACGATGGACGTGGCTTGAGGCCGAGACCGAGGCTGCTTGAGTCATCGGAGAAGGCCGAGTACAATTTGATGACTGCAGGAGAGTTCGGTGACGATTCCATCACATCGATTCCTTTTCAGGTTTTGAGCTGGAAGCCTCGAGCTCTATATTTTCCGAATTTTGCGACTGCGGAACAATGTAAAAGTATAGTTGGTGTAGCAAAGGCTGGCCTCAAGCCATCAGCGTTGGCGTTACGCGAGGGAGAAACCGAGCAGAATACCAAGGGAATTAGAACAAGCTCTGGTGTGTTTGTTAGTTCTTCTGAGGATAAAACAGGGACTTTAGCTATCATTGAGGAGAAAATTGCTCGAGCAACAATGATTCCCAGGAGTCACGGAGAGGCATTTAATATCTTACGCTACGAGGTCGATCAAAGATATAATCCTCATTATGATTCATTCAATCCTGCTGAATATGGCCCACAAAAGAGCCAAAGGATGGCTTCATTTTTGCTGTATTTAACTGATGTCCAGGAAGGTGGCGAGACTATGTTTCCATTTGAGAATGGCTTGAACATGGATGTCAGCTATAGATACGAAGACTGCATTGGCTTAAGAGTAAGGCCACGACAGGGTGATGGACTTCTATTTTATTCATTGTTCCCTAATGGTACAATTGACCCGACATCACTCCATGGGAGCTGCCCCGTGATAAAGGGGGAGAAGTGGGTTGCTACAAAGTGGATAAGGGATCACGACCAGGATTATTAG 882 0.4535 MKAKTVKGNLSSRSNKLTFPYIFLICIFFFLAGFFGSTLFSHSQDDGRGLRPRPRLLESSEKAEYNLMTAGEFGDDSITSIPFQVLSWKPRALYFPNFATAEQCKSIVGVAKAGLKPSALALREGETEQNTKGIRTSSGVFVSSSEDKTGTLAIIEEKIARATMIPRSHGEAFNILRYEVDQRYNPHYDSFNPAEYGPQKSQRMASFLLYLTDVQEGGETMFPFENGLNMDVSYRYEDCIGLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVATKWIRDHDQDY* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3416 293 SMART p4hc 90 287 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lja4g3416 293 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 168 288 IPR005123 -
Lja4g3416 293 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 7 292 IPR045054 -
Lja4g3416 293 Gene3D q2cbj1_9rhob like domain 83 287 - -
Lja4g3416 293 Pfam 2OG-Fe(II) oxygenase superfamily 174 287 IPR044862 -
Lja4g3416 293 PANTHER TYPE 1 PROLY 4-HYDROXYLASE 7 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3416 Lja-Chr4 64574213 64578440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3416 K00472 - gmx:100775302 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0277 2 2554320 2560104 Lja4g3416 4 64574213 64578440 ECH
Lja4g3416 4 64574213 64578440 Lja4g3416 4 64574213 64578440 ECH