Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0429 ATGAAGGGCAAGGCGAAAAGCTCCAAACTGAAGTTTGGTATTCCTGTTTTCTGTCTCTGCACCCTCTTCTTCTTTGTTGGGCTCTTTGTGTCTCCTATCATCTTTCAGGATTTGGGTGAGGTGGGGCAAGGGTCTAGGATACTCCATCATTCGGTGAAGAAAGAAGAGTATGAGCCTCTTGAGCATGGTAAATCTGGGGAACCTTTTGTTGATTCAATTCCATTTCAGATTTTAAGTTGGAGACCCAGGGCGGTTTACTTTCCAAACTTCACAAATGCGGAAGTATGTGAACAAATAATTAAAATGGCAAAGCCTAAACTTGAACCATCAAGGTTAGCTTTGCGAAAAGGAGAAACTGCTGAGAACACAAAAGACACTAGAACAAGTTCAGGCGCATTCATCAGTGCATCAGAAGACAAATCTGGCATCTTAGACCTCATTGAGACGAAAATCGCTAAGGCTACAATGATTCCAAAGACCTTTGGAGAAGATTTCAATATATTGAGGTATGAAGTTGGCCAGAAATATGATTCTCATTATGATGCATTCAACCCAGATGAATATGGCAAACTTGAGAGCCAAAGGGTTGCTTCCTTCTTGTTATACCTGTCAAATGTGGAAGCCGGAGGAGAAACAATGTTCCCTTTCGAGGATGGTTTGAATATGGATTCAGGTTATGATTACCATGAATGCATTGGTTTGAAGGTGAAGCCCCGGCAAGGTGATGGACTTCTATTTTATTCATTGTTTCCAAATGGGAAAATTGATAAGACTTCTCTTCATGGAAGTTGTCCGGTGATTAAAGGGGAGAAATGGGTTGCAACAAAGTGGATTAATGATCGAAAGCTATTCTACTAG 858 0.4103 MKGKAKSSKLKFGIPVFCLCTLFFFVGLFVSPIIFQDLGEVGQGSRILHHSVKKEEYEPLEHGKSGEPFVDSIPFQILSWRPRAVYFPNFTNAEVCEQIIKMAKPKLEPSRLALRKGETAENTKDTRTSSGAFISASEDKSGILDLIETKIAKATMIPKTFGEDFNILRYEVGQKYDSHYDAFNPDEYGKLESQRVASFLLYLSNVEAGGETMFPFEDGLNMDSGYDYHECIGLKVKPRQGDGLLFYSLFPNGKIDKTSLHGSCPVIKGEKWVATKWINDRKLFY* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0429 285 PANTHER TYPE 1 PROLY 4-HYDROXYLASE 11 282 - -
Lja5g0429 285 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 11 282 IPR045054 -
Lja5g0429 285 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 280 IPR005123 -
Lja5g0429 285 Pfam 2OG-Fe(II) oxygenase superfamily 166 279 IPR044862 -
Lja5g0429 285 Gene3D q2cbj1_9rhob like domain 75 279 - -
Lja5g0429 285 SMART p4hc 82 279 IPR006620 GO:0005506|GO:0016705|GO:0031418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0429 Lja-Chr5 3763225 3765952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0429 K00472 - gmx:100811068 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0429 5 3763225 3765952 Lja5g0429 5 3763225 3765952 ECH
Lja2g0277 2 2554320 2560104 Lja5g0429 5 3763225 3765952 PCT