Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4006 ATGATAAGGAGAGAACGCAGATTCTTAAACGAGTCTGAAAACCCCTCATTCTCCTCCACCCTGCTTGACCAGATTTACCGTTCCATTGATCAAGGAGATTCTGACATGAAGTTCTACACAGGGAAAACAGGGGAAAAACAGAGCAGGGTGTGTGTAACAGAGGAGCATTTGTCGGCAAAATCGAGTGTTTCTCGTGATTGGAAAGCAAACAATGTAGTTGGAACTCAAGGGAGGCAGAGGATGATGCAGAAGGAAAGAAATTTCCATCTGGGTCGTCAAGTTCATGTTCATGACCAAGATGCTCTGTTTTTCAGCTCTACTTCGAGTTCTTCAGATTCAAGTTCGGGGTTGCTGTCGTCCTCGTCCCCAGATATTGAAACCTTGTACGGAGTGAGATCAAGAGGTTCGTGTTTCGCTCCGGCGAGGCCTAAGCCGGTTAGAACCACCGTGCCGGAGAAGAAGCACGTAGAGAGACAGAGACACATTGTGAGTGACGATGATGATGGTTTGATCAAGTCGAAATCGAGGGCGTTGAAGATTTACAACAACCTGAAGAAGGTGAAGCAACCGATCTCACCAGGGGGGAAACTCACGAGTTTTCTGAACTCTCTGTTTACTACAGGGAACAGCAACAACACGAAGAAAACCAAGCCCTGTTTTGAAGATGCGAACGCTTTGAGAAAAACAGAGTCAGGACAAGCTTCTACTTGCTCCTCTGCTTCCTCTTTTGCTCGCTCTTGTTTGAGTAAGAATTCACCTTCCACCAGAGAAAAATTGCGGAACAATGGGGTTAAGAGGACGGTGCGTTTCTACCCTGTGAGCGTGATTGTGGATGAAGATTCTCGACCCTGTGGGCACAAGTCCTTGTATGAAACAGAGGATGCGAGGCTAATGGCTATGTCGGTGCCAACCGCGTGGAAAATTGGAACGAAGAAGAATGTTGAAGAGGTCAAGGACAAGAAAAACAGGGCAATGGAAGAGGCTGCTAGAGAGATTTTGGAAGAGTACCATCATATCCAGAGGAAGAGCGATTTGGTTTTGAGAAGAAACTTGGAGGATGAAATTGAAGATGATGATGAGGATGATGCAGCGAGTTGTTCAAGTTCGGATCTGTTCGAGCTTGATCACCTGCATGAGGAGCTGCCTGTGTATGAGACTACTCGTGTTGGTACTAATCGTGCCATTGCTAATCGTTTCATAATGTAA 1206 0.4619 MIRRERRFLNESENPSFSSTLLDQIYRSIDQGDSDMKFYTGKTGEKQSRVCVTEEHLSAKSSVSRDWKANNVVGTQGRQRMMQKERNFHLGRQVHVHDQDALFFSSTSSSSDSSSGLLSSSSPDIETLYGVRSRGSCFAPARPKPVRTTVPEKKHVERQRHIVSDDDDGLIKSKSRALKIYNNLKKVKQPISPGGKLTSFLNSLFTTGNSNNTKKTKPCFEDANALRKTESGQASTCSSASSFARSCLSKNSPSTREKLRNNGVKRTVRFYPVSVIVDEDSRPCGHKSLYETEDARLMAMSVPTAWKIGTKKNVEEVKDKKNRAMEEAAREILEEYHHIQRKSDLVLRRNLEDEIEDDDEDDAASCSSSDLFELDHLHEELPVYETTRVGTNRAIANRFIM* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4006 401 PANTHER PROTEIN BIG GRAIN 1-LIKE B 3 401 - -
Lja1g4006 401 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 3 401 IPR039621 GO:0009734
Lja1g4006 401 Coils Coil 307 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4006 Lja-Chr1 50783082 50784287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4006 - - aprc:113865561 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4006 1 50783082 50784287 Lja1g4006 1 50783082 50784287 ECH
Lja6g2022 6 48301855 48303273 Lja1g4006 1 50783082 50784287 ECH
Lja3g1564 3 17171349 17173289 Lja1g4006 1 50783082 50784287 ECH