Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3843 ATGGAGAATGGTGAATTGAGAGTGGCAAGTGCACGCATAGGAAGCTCCAGCATCTGGAGAAGCGGTGCTGTTGATGTGTTTTCAGGGTCTTCAAGGAGGGAAGATGATGAAGAAGAGCTTACATGGGCTGCCATTCAGAAGCTTCCAACGTATCTTCGAATGACAAGAGGCATACTCACTGAATCAGATGGTCAACAACCCACAGAGATTGACATAAACAAACTTGGACCTCTTCAGAGGAAGAATCTGGTGGAGAGGCTCGTCAAGATTGCGGAGGAAGATAATGAGAAGTTCCTCTTGAAGCTCAGAGAACGCATTGATCGAGTTGGACTTGATATTCCAACAATTGAAGTCCGTTTTGAGCACTTGAATGTTGAAGCAGAAGCTCATGTAGGAAGCAGGGCACTACCCACAATTTTGAACTTCTCCATTAATTTGTTAGAGGGATTCCTGAAATCTCTTCACCTCACTCCTAGTCGAAAGAAGCCATTCTTAGTTCTCAATAATGTTAGTGGAATCATCAAGCCTAAAAGAATGACACTGCTCTTAGGTCCTCCAACCTCCGGAAAAACCACATTACTGTTGGCACTGGCTGGAAGACTCAGTAAAGATCTAAGATTTTCCGGGCGAGTTTTGTACAATGGTCATGGGATGGAAGAATTTGTACCTCAGAGGACATCAGCTTACATAAGCCAAACTGATCTGCACATAGGAGAAATGACAGTCAGAGAAACATTGGCCTTTTCAGCAAGGTGTCAAGGGATTGGAACCCGTTATGAGATGCTGGCAGAATTATCAAGAAGAGAAAAGGCTGAAAACATTAAACCGGATCCTGATATTGATATTTATATGAAGGCAGCAGCACTAGAAGGCCAAGAAACCAATGTAGTTACAGATTATATAATTAAGATTTTGGGACTAGATATTTGTGCTGATACCATGGTAGGGGATGACATGATTCGAGGTATTTCGGGCGGACAAAAGAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGAGCCCTTTTCATGGATGAAATATCAACTGGTTTGGACAGTTCTACCACATTCCAAATGATCAATTCCCTGAGACAATCCATCCACATTCTGAATGGAACAGCTGTCATCTCTCTTCTCCAGCCAGCACCAGAAACTTTTGAGTTATTTGATGATATCATTCTCCTCTCTGATGGACAAATTGTCTACCAAGGTCCAAGGGAAAATGTGCTTGAGTTCTTTGAAAACATGGGCTTTAAGTGTCCTGAGAGAAAAGGAGTAGCAGATTTTTTACAAGAAGTAACATCAAGAAAAGATCAAGAACAATATTGGACAAATAAAGATGAACCATATACCTTCATCACTGTTAAACAATTTGCTGAAGCTTTTCAGTTATTTCACGTTGGTCGAAAACTTGGTGATGAACTTGGTGCTCCATTTGACACATCCAAAGGCCACCCTGCAGTATTAACAAAAAACAAGTATGGTATGAGCAAGAAGGAATTGTTAAAGGCTTGTATATCCAGAGAAATCCTACTAATGAAAAGGAATTCTTTTATCTATATCTTCAAGATGTGGCAGTTAATTCTCACTGGCTTAATAACAATGACATTGTTCCTACGAACTGAGATGCACCGGAATACAGAAGCTGATGGTGGGATTTACATGGGTGCTCTTTTCTTCATAATGATTGTGATTATGTTCAATGGATTTTCTGAGTTATCCATGTTCATTATGAAACTTCCGGTTTTTTATAAGCAAAGGGACCTTCTCTTTTTTCCTGCTTGGGCATACTCTCTGCCTACATGGATCCTAAAGATTCCTATCTCCTTTCTAGAAGTTGGTATCTGGGTTGTGATGACTTATTATGTCATAGGATTTGATCCAAGTTTTGAAAGGTTCCTCAAGCAGTACTTTCTGCTAGTTTGTATCAACCAAATGGCATCTGGACTTTTTCGATTTATGGGGGCACTTGGGAGGAACCTTATTGTTGCAAACACAGTTGGATCCTTTGGTTTACTTGCAGTTCTGGTCATGGGTGGATTTATCCTATCAAGAGTTGATGTGAAGAAGTGGTGGTTATGGGGTTACTGGGTCTCCCCCATGATGTATGGACAGAATGCTATAGCTGTGAATGAATTCCTCGGAAAGAGTTGGTCACATGTTCCTTCTAATTCAACAGAACCATTAGGAGTACAGGTCTTGAAGTCGCGTGGGATTTTCCCAGAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTCCTATTCAACTTCCTTTTCCCATTGGCCTTACATTATCTTGAGCCATTTGATAAACCACAAGCCTTAGTATCAGAAGAAACCTTAGCTGAAAGAAATGCTGCCGGAAGCGGACACGTCATTGAACTGTCGCCTAGATTAGAAGATTCTTCTGCTAAGGAAAACGAAGGCCGAAGAAGTTTGTCTTCCAGAACACTATCAGCAGGAGTAGGAACCATTAGTGAATCTGATCACAACACGAAGAAGGGGATGGTTCTTCCTTTCACACCTCATTCAATCACTTTTAATGAGATTAGATATGTTGTGGATATGCCACAGGAAATGAAGGAGCAAGGCATTCTTGAAGATCAACTTGAACTTCTGAAGGGTGTTAATGGAGCTTTTAGGCCAGGAGTACTGACAGCTCTAATGGGTATAAGTGGAGCTGGTAAAACAACACTAATGGATGTGTTGTCTGGAAGGAAAACAGTAGGATACATTCAAGGACAAATCACTATATCAGGGCATCCTAAAAATCAAGAAACGTTTGCTCGAATATCAGGATATTGTGAACAGACAGATATCCACTCTCCCCATGTTACTGTCTATGAGTCTCTTGTTTATTCTGCGTGGCTCCGGTTACCTCCCGAGGTTGATTCTGCCACCAAACAGATGTTCATTGAGGAAGTTATGGAGCTCGTAGAGCTAACTTCATTAAGAGAAGCACTGGTTGGCTTGCCTGGAGTGAATGGTTTGTCGACGGAGCAGCGCAAGAGGTTAACAATTGCAGTTGAACTTGTTGCCAATCCTTCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCTATAGTGATGAGGACTGTGAGGAATACAGTAGATACAGGGAGGACAGTGGTCTGCACAATCCACCAGCCTAGCATTGATATATTTGATGCTTTTGATGAGCTACTTCTCTTGAAGCGTGGAGGTGAGGAAATATATGTTGGGCCTTTAGGCCTGCAATGTTCACATCTGATCAATTACTTTGAGGGAATCAATGGAGTGCCAAAAATTAAGAATGGTTATAATCCTGCCACATGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGCAGCTCTTGGAGTTAACTTCGCTGAAACATACAAGAATTCTGACCTGTATAGGAGAAACAAGGCCTTGATCAGGGAACATAGTACACCAGCAGCAGGGTCTAAAGACATGTACTTCGCAACACAGTACTCACAATCTTTCTTAACCCAATGCATGGCTTGCCTTTGGAAACAGAATCTATCATACTGGAGAAACCCCCCATATACTGCAGTGAGACTTTTATTCACAACAATCATAGCTGTGTTGTTCGGGACAATATTCTGGGATATAGGCTCGAAAACGAAACGAAAACAAGATCTATTTAATGCTATGGGATCAATGTATGCTTCAATCCTCTTCATTGGGGTACAAAATGCTACAACTGTGCAACCAGTTGTAGCCATTGAGAGAACAGTTTTTTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTGCCATATGCATTTGGACAGGTTGCTGTTGAGATCCCACACATACTCACACAGACCCTGATATATGGGGTTATAGTGTATTCCATGATTGGATTTGAGTGGACTACAACCAAGTTCTTCTGGTATCTCTTCTTCATGTTCTTCACATTTTTGTACTTCACCTTCTTCGGAATGATGCTTGTGGGTGCTACCCCAGATCACAATGTTGCTGCTATAGTTTCTTTTGGGTTCTACTTGACATGGAACCTTTTCTCAGGATTTGTGATTCCCAGACCAAGGGCGCCAGTATGGTGGAGATGGTTCTTCTGGATCTGTCCTATCTCTTGGACCCTATATGGATTGGTTACTTCACAATTCGGTGATATACAAGAACGGATGGAGACTGGAGAGACTGTGCAAGAGTTTGTGAGGACTTATTTTGGGTATAGAGATGATTTCAAAGGTGTAGCTGCAGCTATGGTGGTTGGCTTTTCACTAGTCTTTGGAATCACCTTTGCCTTTTCAATTAAGGCTTTCAATTTCCAAAAGAGATGA 4350 0.417 MENGELRVASARIGSSSIWRSGAVDVFSGSSRREDDEEELTWAAIQKLPTYLRMTRGILTESDGQQPTEIDINKLGPLQRKNLVERLVKIAEEDNEKFLLKLRERIDRVGLDIPTIEVRFEHLNVEAEAHVGSRALPTILNFSINLLEGFLKSLHLTPSRKKPFLVLNNVSGIIKPKRMTLLLGPPTSGKTTLLLALAGRLSKDLRFSGRVLYNGHGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRYEMLAELSRREKAENIKPDPDIDIYMKAAALEGQETNVVTDYIIKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTFQMINSLRQSIHILNGTAVISLLQPAPETFELFDDIILLSDGQIVYQGPRENVLEFFENMGFKCPERKGVADFLQEVTSRKDQEQYWTNKDEPYTFITVKQFAEAFQLFHVGRKLGDELGAPFDTSKGHPAVLTKNKYGMSKKELLKACISREILLMKRNSFIYIFKMWQLILTGLITMTLFLRTEMHRNTEADGGIYMGALFFIMIVIMFNGFSELSMFIMKLPVFYKQRDLLFFPAWAYSLPTWILKIPISFLEVGIWVVMTYYVIGFDPSFERFLKQYFLLVCINQMASGLFRFMGALGRNLIVANTVGSFGLLAVLVMGGFILSRVDVKKWWLWGYWVSPMMYGQNAIAVNEFLGKSWSHVPSNSTEPLGVQVLKSRGIFPEAYWYWIGVGASIGYMFLFNFLFPLALHYLEPFDKPQALVSEETLAERNAAGSGHVIELSPRLEDSSAKENEGRRSLSSRTLSAGVGTISESDHNTKKGMVLPFTPHSITFNEIRYVVDMPQEMKEQGILEDQLELLKGVNGAFRPGVLTALMGISGAGKTTLMDVLSGRKTVGYIQGQITISGHPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSATKQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGLQCSHLINYFEGINGVPKIKNGYNPATWMLEVTSEAQEAALGVNFAETYKNSDLYRRNKALIREHSTPAAGSKDMYFATQYSQSFLTQCMACLWKQNLSYWRNPPYTAVRLLFTTIIAVLFGTIFWDIGSKTKRKQDLFNAMGSMYASILFIGVQNATTVQPVVAIERTVFYRERAAGMYSALPYAFGQVAVEIPHILTQTLIYGVIVYSMIGFEWTTTKFFWYLFFMFFTFLYFTFFGMMLVGATPDHNVAAIVSFGFYLTWNLFSGFVIPRPRAPVWWRWFFWICPISWTLYGLVTSQFGDIQERMETGETVQEFVRTYFGYRDDFKGVAAAMVVGFSLVFGITFAFSIKAFNFQKR* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3843 1449 Pfam ABC-2 type transporter 382 435 IPR043926 GO:0140359
Lja1g3843 1449 Pfam ABC-2 type transporter 1177 1391 IPR013525 GO:0016020|GO:0140359
Lja1g3843 1449 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Lja1g3843 1449 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 7 1449 - -
Lja1g3843 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 424 IPR027417 -
Lja1g3843 1449 MobiDBLite consensus disorder prediction 805 819 - -
Lja1g3843 1449 Pfam Plant PDR ABC transporter associated 720 783 IPR013581 -
Lja1g3843 1449 Pfam ABC transporter 880 1032 IPR003439 GO:0005524
Lja1g3843 1449 CDD ABCG_PDR_domain2 849 1087 IPR034003 -
Lja1g3843 1449 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Lja1g3843 1449 CDD ABCG_PDR_domain1 149 406 IPR034001 -
Lja1g3843 1449 PANTHER ABC TRANSPORTER G FAMILY MEMBER 39-LIKE ISOFORM X2 7 1449 - -
Lja1g3843 1449 MobiDBLite consensus disorder prediction 804 823 - -
Lja1g3843 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Lja1g3843 1449 SMART AAA_5 889 1081 IPR003593 -
Lja1g3843 1449 SMART AAA_5 176 408 IPR003593 -
Lja1g3843 1449 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 852 1104 IPR003439 GO:0005524
Lja1g3843 1449 Gene3D - 151 462 IPR027417 -
Lja1g3843 1449 Gene3D - 871 1090 IPR027417 -
Lja1g3843 1449 Pfam ABC-transporter N-terminal 85 142 IPR029481 -
Lja1g3843 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1081 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3843 Lja-Chr1 48579927 48587356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3843 K08711 - gmx:100804030 2588.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2823 5 55686137 55696277 Lja1g3843 1 48579927 48587356 PCT
Lja1g3843 1 48579927 48587356 Lja5g2822 5 55670806 55686646 PCT