Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2822 ATGGCACAAGAAGATAATGAGAAGTTCTTGTTGAAAATCAGGGAACGCTTGGACAGAGTGGGACTTGATATACCAACAGTTGAAGTTCGGTTTGAAAATTTAAACGTGGAGGCACAAGTTTATGTTGGAGCCAGAGCATTGCCTTCATTATTCAAATTTTTTGCTAACGTGCTAGAGGGGTTCTTATATTATCTTCATATAATTCGGAGTCCCAAGAATCAGTTACATGTCCTTCAGAATATTAGTGGAATCATAAAGCCTCAAAGGATGACATTGCTTTTGGGGCCACCAGGCTCAGGAAAGACTACTTTGCTGTTGGCGTTAGCTGGAAAACTTGGGAAAGATTTGAAACATTCTGGGAGAGTAACATACAATGGTCATGAGCTGGACGAGTTTGTGCCACAAAGGACATCAGCTTATATAAGTCAACATGATAATCACATTGGAGAAATGACTGTCCGAGAAACGCTAGCTTTCTCAGCAAGATGTCAAGGAGTTGGACAGAACTATGAGTTGTTGACTGAACTACTAAGAAGAGAGAAGGAAGCAAAGATTAAACCAGATGCTGATGTTGATGCCTCTATGAAGGCAGCTGTACTAGAAGGACAACAGACAAGTGTGGTCACTGACTATATTCTTAAGATTTTGGGGCTTGAAGTGTGTGCTGACATTATGGTAGGTGATGGAATGATAAGAGGCATCTCAGGAGGGCAGAAAAAACGAGTCACAACAGGGGAGATGCTAGTTGGACCTGTAAGGGTGTTTTTCATGGATGAGATATCAACTGGTTTGGACAGCTCCACTACTTTTCAAATAATCAACTCAATCCGGCAATCCATCCATATTCTAAATGGAACCGCACTTGTGTCCTTACTACAGCCAGCACCAGAAACTTATGAACTGTTTGATGATATAATAGTTCTAACAGATGGGCATATTGTGTACCAAGGACCAAGAGAAAATGTGCTTGAGTTTTTTGAATCAATGGGTTTCAAGTGTCCTGAGAGAAAAGGAGTTGCTGACTTCTTACAAGAAGTGACATCAAGAAAAGATCAATGGCAATATTGGGCATATAAGGATGAACCTTATAGATTTGTTACAGTCAAGGATTTTTCTGAAGCATTCCAGTCATTTGACGTTGGTCAGAAACTTCGAGAAGAGTTGGCCAATCCTTTTGACAAGTCTAAATGCCATCCAAATGCCTTGACGAAAAAGAAGTATGGTGTTAACTCAAAGGAACTGCTGAGTGTTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCCATTGTTTACATATTCAAAGTCACCCAACTTATTTTTTTAGCTGTCATGGCATCAACATTATTTATACGAACTAAGATGCATCGAGATACCGTGGAGGATGGAGGAGCTTACATGGGTGCTCTGTTCTTCACAGTTAGTGTAGCAATGTTCAATGGAATATTAGAGCTACATATGACCATCTTGAAACTTCCTGTCTTTTACAAGCAAAGGGACCTTCTTTTCTATCCTTCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAATAACCCTCTTAGAAGTTGCCATCTGGGAAGGCATCTCTTACTATGCCATTGGCTATGATCCAATTTTTGCTAGGCTTTTAAAACAATACTTGATAATTCTATGCATTAATGTGATGGCTTCTGCATTATTTCGATTGATAGCAGCATTAGGAAGGGATGTTGTAGTCGCAAACACTATTGGGTCCTTTACGTTACTAGTAGTTCTGGTTTTGGGAGGATTTGTGATTTCACGAGACGATGTGCACAAATGGCTTATATGGGGTTACTGGTCCTCACCATTGATGTATGGACAGAATGCTATAGTTGTCAATGAATTTCTCGGGCATAGTTGGACAAAGGTTATTCCTAATTCCAATGAGACATTGGGAGTTTTGATATTGAAAACGCGTGGGTTTTTCACAGAAGCTTATTGGTATTGGATTGGTGTAGGAGGATTGATTGGTTATATTTTTCTATTTAATTTCCTCTTCATCTTGGCTTTGCGATATCTCAGTCCACTCCGAACGGATCAAGCAGGGCTATCCAAAGAGAAATTGCTCGAGAGAAATGCTTCAACAGCTGAGGAGTTCATTGAGTTACCAACACGAAAGAGTTCTTCTGAAACAAAGATGGTAGAAGAAGCAAGTATATCATCCAGGTCGTTTTCTGGAAGAGTCAATGATGTTAATGCGAGAAGTGGAAGGAGGGGCATGGTTCTTCCTTTTAAACCCCTCTCTCTCACTTTTGATGAGATATCATATTCCGTAGACATGCCGCAGGAAATGAAAAATCAAGGAGTTTTCGAGGACCGTCTTAAACTTTTGAAGGGTGTCAGTGGAGCCTTTAGGCCTGGAGTACTAACAGCTCTAATGGGTGTAAGTGGTGCTGGCAAGACTACTCTGATGGATGTTTTAGCTGGAAGGAAAACTGGTGGATATATTGAAGGAGCCATCAAGATATCTGGGTACCCAAAGAATCAACAAACATTTGCTCGCATAGCAGGTTATTGTGAACAATTTGATATCCACTCACCTAATGTTACAGTTTATGAATCTTTGCTATATTCTGCCTGGCTTCGATTACCACGTGAAGTGGATACTGCAACTAGAAAGATGTTCATTGAGGAAGTTATGGAGCTTGTGGAGCTTAATTCATTAAGGGAAGCACTTGTTGGATTGCCGGGTGAGACTGGACTTTCAACTGAGCAGCGCAAGAGACTTACAATTGCAGTTGAACTTGTAGCCAATCCATCAATAATATTCATGGATGAGCCAACCTCTGGTCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACTGTGAGGAACACCGTGGACACAGGACGGACTGTGGTTTGCACCATCCACCAGCCAAGTATTGATATATTTGATGCATTTGATGAGCTGCTACTTCTAAAATTGGGAGGGGAGCAAATATATGCTGGTCCATTAGGCCGCCAGTGTTCCCAACTGATTCAGTTCTTTGAGGCTATTCATGGAGTTCCCAAGATTAGAGACGGTTATAATCCTGCAACCTGGATGTTGGAAGTTACATCAGCAGGGACTGAAGCTAGTCTTAAGGTCAATTTCACCGATGTTTACAAAAACTCAGAACTACACCGGAGAAATAAACAACTGATCCAGGAGCTCAGTACACCTCCTCAAGGTTCAAAGGATCTACACTTTGATACTCAGTATTCACAGACTTGGGTGGCACAATTTAAAGCTTGCATATGGAAACAACATTTATCTTATTGGCGGAACACATCATATACTGCAGTTAGACTCCTATTTACAACACTGATAGCTTTATTGTTTGGGCTCCTATTTTGGCAGATTGGTTCCAAAAGGGGAAAGGAGCAAGATCTTTTCAATGCACTGGGTTCAATGTATGCTGCAGTTAACTTCATTGGAGTTCAAAATAGTGCCTCAGTGCAGCCAATCATATCAGTTGAGAGAACAGTATTCTACAGAGAAAGAGCTGCTGGAATGTATTCAGCTTTGCCATATGCTTTTGCACAGGTTTGTATCGAGCTTCCTCACATCTTGGCTCAATCCTTTATATATGGGATTGTAGTATATGCCATGATGGGGTTCAATTGGTCATCATCAAAGTTCTTATGGTATCTTTTCTTCACGTACTTCACATTCTTGTACTTCACCTTCTATGGTATGATGACCATGGCCATCAGTCCCAACCCACAAATTGCCAGCATAATATCCTCGGCATTTTACTCAATTTGGAGCCTTTTCTCAGGCTTCATCATTCCCTTATCAAGAATGCCCATATGGTGGAAGTGGTACTATTGGATTTGCCCTGTTGCATGGACCATAAATGGACTAGTGACTTCCCAATATGGAGATGACACGAGCAAACTGGAAAATGGTCAACGTATTGAAGAATTTGTGGAGAGTTACTTCGGATTTCATTATGACTCTCTGGGAATGGTCGCAGTTGTGGTGGCTGGTTTTTCAGTGTTATTTGCACTCATCTTCACGTTTGGCATCAGATGGACTTTTCTCCAAAATAGTTCATGCTTATATGAAAATGTTTATAGCTTTGTGTCTTTTCATATAAAATCTTATTCCCAGTGTAGTATATTTTTCGTGTAG 4152 0.4066 MAQEDNEKFLLKIRERLDRVGLDIPTVEVRFENLNVEAQVYVGARALPSLFKFFANVLEGFLYYLHIIRSPKNQLHVLQNISGIIKPQRMTLLLGPPGSGKTTLLLALAGKLGKDLKHSGRVTYNGHELDEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGVGQNYELLTELLRREKEAKIKPDADVDASMKAAVLEGQQTSVVTDYILKILGLEVCADIMVGDGMIRGISGGQKKRVTTGEMLVGPVRVFFMDEISTGLDSSTTFQIINSIRQSIHILNGTALVSLLQPAPETYELFDDIIVLTDGHIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQWQYWAYKDEPYRFVTVKDFSEAFQSFDVGQKLREELANPFDKSKCHPNALTKKKYGVNSKELLSVCASREFLLMKRNSIVYIFKVTQLIFLAVMASTLFIRTKMHRDTVEDGGAYMGALFFTVSVAMFNGILELHMTILKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLLEVAIWEGISYYAIGYDPIFARLLKQYLIILCINVMASALFRLIAALGRDVVVANTIGSFTLLVVLVLGGFVISRDDVHKWLIWGYWSSPLMYGQNAIVVNEFLGHSWTKVIPNSNETLGVLILKTRGFFTEAYWYWIGVGGLIGYIFLFNFLFILALRYLSPLRTDQAGLSKEKLLERNASTAEEFIELPTRKSSSETKMVEEASISSRSFSGRVNDVNARSGRRGMVLPFKPLSLTFDEISYSVDMPQEMKNQGVFEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGAIKISGYPKNQQTFARIAGYCEQFDIHSPNVTVYESLLYSAWLRLPREVDTATRKMFIEEVMELVELNSLREALVGLPGETGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKLGGEQIYAGPLGRQCSQLIQFFEAIHGVPKIRDGYNPATWMLEVTSAGTEASLKVNFTDVYKNSELHRRNKQLIQELSTPPQGSKDLHFDTQYSQTWVAQFKACIWKQHLSYWRNTSYTAVRLLFTTLIALLFGLLFWQIGSKRGKEQDLFNALGSMYAAVNFIGVQNSASVQPIISVERTVFYRERAAGMYSALPYAFAQVCIELPHILAQSFIYGIVVYAMMGFNWSSSKFLWYLFFTYFTFLYFTFYGMMTMAISPNPQIASIISSAFYSIWSLFSGFIIPLSRMPIWWKWYYWICPVAWTINGLVTSQYGDDTSKLENGQRIEEFVESYFGFHYDSLGMVAVVVAGFSVLFALIFTFGIRWTFLQNSSCLYENVYSFVSFHIKSYSQCSIFFV* 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2822 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 996 IPR027417 -
Lja5g2822 1383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 335 IPR003439 GO:0005524
Lja5g2822 1383 Pfam ABC transporter 78 260 IPR003439 GO:0005524
Lja5g2822 1383 Pfam ABC-2 type transporter 293 371 IPR043926 GO:0140359
Lja5g2822 1383 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1353 - -
Lja5g2822 1383 Gene3D - 66 366 IPR027417 -
Lja5g2822 1383 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 760 1012 IPR003439 GO:0005524
Lja5g2822 1383 Pfam ABC-transporter N-terminal 4 51 IPR029481 -
Lja5g2822 1383 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 1 1353 - -
Lja5g2822 1383 Pfam ABC-2 type transporter 1086 1298 IPR013525 GO:0016020|GO:0140359
Lja5g2822 1383 Pfam ABC-2 type transporter 414 626 IPR013525 GO:0016020|GO:0140359
Lja5g2822 1383 Pfam Plant PDR ABC transporter associated 631 692 IPR013581 -
Lja5g2822 1383 CDD ABCG_PDR_domain2 757 995 IPR034003 -
Lja5g2822 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 335 IPR027417 -
Lja5g2822 1383 Gene3D - 774 1006 IPR027417 -
Lja5g2822 1383 SMART AAA_5 797 989 IPR003593 -
Lja5g2822 1383 SMART AAA_5 87 312 IPR003593 -
Lja5g2822 1383 Pfam ABC transporter 788 940 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2822 Lja-Chr5 55670806 55686646 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2822 K08711 - gmx:100815093 2290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3843 1 48579927 48587356 Lja5g2822 5 55670806 55686646 PCT