Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3416 ATGTTGCCTCAGAAGCAAGCAGAGGAAGCAATAGTGGCAAGTGAAACAGAGCATGAAGTGAGTGGCAGAGGAGAAGAAGAACAAGAAGGGAAGGATCATGTTCAGTCAGGGTTCAGTTTCAGAAACTTCCTCTGGCATGGTGGTTCTGTTTGGGACGCTTGGTTCAGCTGCGCTTCAAATCAAGTGGCTCAAGTGCTGTTGACACTTCCGTATTCATTCTCTCAACTGGGCATGCTATCAGGGATCTTGCTTCAGGTCTTCTATGGAATCATGGGAAGCTGGACTGCTTATCTAATCAGTGTTCTCTATGTTGAATACCGTAGCAGAAAGGAAAAGGAAAACGTCAGTTTCAAGAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGGTTGCTGGGTCCATATTGGAAAGCAGCAGGGCTAGCTTTCAATTGTACTTTCCTCCTGTTTGGATCTGTGATACAGCTGATAGCGTGTGCAAGCAACATCTACTACATAAATGACCATTTGGACAAGAGGACTTGGACTTATATCTTTGGAGCTTGCTGTGCTACCTCTGTGTTCATACCTTCATTCCACAATTACAGAATCTGGTCATTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACCTCACTATAGCTGCTATTGTTCATGGCCAGGCTGAAAATGTGACACACACTGGTCCAAAAAAGCTTGTGCTGTATTTCACTGGAGCAACCAACATACTGTACACTTTTGGTGGACACGCAGTTACTGTAGAGATTATGCATGCCATGTGGAAACCACAGAAGTTCAAGTACATATACTTGCTGGCCACATTGTACGTTTTCACACTAACGATTCCATCTGCTTCTGCGGTTTACTGGGCTTTTGGTGATGAGCTTCTCAATCATGCTAACGCCTTCTCTCTCCTTCCCAAAAATCGCTTTCGAGATGCTGCTGTTATCCTCATGCTCATTCACCAGTTCATCACATTCGGTTTTGCTAGTACCCCATTGTACTTTGTGTGGGAGAAGGTAATTGGGATGCATGACACAAGGAGCATTTGTCTAAGGGCACTAGCAAGGTTGCCAGTGGTGATACCAATATGGTTCTTGGCTATAATATTTCCCTTCTTTGGTCCCATTAACTCTGCTGTTGGAGCTCTTCTTGTTAGCTTTACCGTTTACGTCATCCCCGCCGCCGCCCATATGCTCATTTACAGAAAAGCCTCCGCAAGACAGAATGCTGCTGAGAAGCCTCCTTTCTTCCTGCCAAACTGGACTGCAATGTTTGTGATAAACACATTCATTGTGGTGTGGACATTGGTGGTTGGATTTGGGTTTGGAGGATGGGCCAGCATGACCAACTTTATTAGGCAAATTGACACATTTGGGCTCTTCGCCAAGTGCTACCAGTGCAAGCCCCCTACTCCGACCGCGCCACCCCCTCACGCCCTTCACCACCATTGA 1458 0.4595 MLPQKQAEEAIVASETEHEVSGRGEEEQEGKDHVQSGFSFRNFLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATSVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVHGQAENVTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSASAVYWAFGDELLNHANAFSLLPKNRFRDAAVILMLIHQFITFGFASTPLYFVWEKVIGMHDTRSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYVIPAAAHMLIYRKASARQNAAEKPPFFLPNWTAMFVINTFIVVWTLVVGFGFGGWASMTNFIRQIDTFGLFAKCYQCKPPTPTAPPPHALHHH* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3416 485 PANTHER AUXIN INFLUX TRANSPORTER 2 472 - -
Lja1g3416 485 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g3416 485 MobiDBLite consensus disorder prediction 11 33 - -
Lja1g3416 485 Pfam Transmembrane amino acid transporter protein 46 439 IPR013057 -
Lja1g3416 485 PANTHER OS05G0424000 PROTEIN-RELATED 2 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3416 Lja-Chr1 42580778 42586972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3416 4 469 Organic Solute Cotransporters AT2G21050 77.682 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3416 K13946 - gmx:100810532 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3416 1 42580778 42586972 Lja1g3416 1 42580778 42586972 ECH
Lja6g0436 6 10596997 10602296 Lja1g3416 1 42580778 42586972 ECH
Lja1g3416 1 42580778 42586972 Lja3g3301 3 64773005 64779547 PCT