Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3396 ATGTCCGCCACAGAGGAGAGGGCCTTACTCTCGTGGCGCCAAATCCCGCACCTCCAATGCGGTGTCGTTACACCAAGTACAACCCGCCACGCGCTCCGGCAGAGCGCCACCGTCAGTTTCGCGGCCTCCGCCGGTGACTGCAGGTTCGCCTGCTTCTCGGTGGCGGAAACGAAACTGCATCCGGACCATTTCGTTCCGACACTGTCTCAGCTCCTTAAGCACCCTCTGGCCATCTTGGCGTTCGTGCCCAGAGATGCTTCCCTCTTCTCTGCCGGAGCCATCGCCGGTGCCGCCGCAAAGACCGTCACAGCGCCGCTCGACCGTATCAAGCTCCTTATGCAGACTCATGGTGTGCGGGTTGGGCAAGATAGTGCTAAGAAGGCGGCAATAGGTTTCGTGGAGGCCATAACAGTTATAGGAAAGGAAGAAGGGATTAGAGGTTACTGGAAGGGGAACCTCCCTCAGGTTATCCGGGTTATACCTTATAGCGCAGTTCAGCTTTTTGCTTATGAAATTTATAAGAAAATATTCAGGGGACAGAATGGCGAGCTCTCTGTTGTGGGAAGACTTACAGCAGGTGCTTTTGCTGGCATGACATCTACTTTTATTACCTACCCATTAGATGTTCTGAGATTACGATTAGCAGTTGAACCTGGTTATCGAACCATGTCAGAGGTTGCCTTGAGCATGCTAAGGGAGGAAGGAGTTGCATCTTTCTACAAAGGCCTGGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCTATGAATTTTTGTGTTTTTGACTTGTTAAAGAAGTCATTGCCTGAGAAATATCAAAATAGAACTGAAACATCTATCCTTACTGCCTTGCTTTCGGCATCTCTTGCCACAATGACATGCTATCCTCTCGACACTGTCAGAAGACAGATGCAATTGAAGGGTACACCTTATAAGACATTATTAGATGCTTTTTCAGGTATTGTAGCTCGAGATGGAGTTACTGGTTTGTATCGAGGATTTGTGCCCAATGTTCTAAAAACCCTACCAAACAGCAGCATCAAGCTTACCACTTATGACATTGTTAAGCGCATAATTGCAGCTAGTGAAGAAGAATTTCAAACAATTGTAGAGGAAAATCGCAACAAACAAAAGAACATAAACAATCAAAGATAG 1155 0.4736 MSATEERALLSWRQIPHLQCGVVTPSTTRHALRQSATVSFAASAGDCRFACFSVAETKLHPDHFVPTLSQLLKHPLAILAFVPRDASLFSAGAIAGAAAKTVTAPLDRIKLLMQTHGVRVGQDSAKKAAIGFVEAITVIGKEEGIRGYWKGNLPQVIRVIPYSAVQLFAYEIYKKIFRGQNGELSVVGRLTAGAFAGMTSTFITYPLDVLRLRLAVEPGYRTMSEVALSMLREEGVASFYKGLGPSLIAIAPYIAMNFCVFDLLKKSLPEKYQNRTETSILTALLSASLATMTCYPLDTVRRQMQLKGTPYKTLLDAFSGIVARDGVTGLYRGFVPNVLKTLPNSSIKLTTYDIVKRIIAASEEEFQTIVEENRNKQKNINNQR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 88 101 IPR002067 GO:0055085
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 151 171 IPR002067 GO:0055085
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 101 115 IPR002067 GO:0055085
Lja1g3396 384 PRINTS Mitochondrial carrier protein signature 283 305 IPR002067 GO:0055085
Lja1g3396 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 278 358 IPR018108 -
Lja1g3396 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 184 267 IPR018108 -
Lja1g3396 384 Coils Coil 359 384 - -
Lja1g3396 384 Gene3D Mitochondrial carrier domain 85 363 IPR023395 -
Lja1g3396 384 PANTHER SOLUTE CARRIER FAMILY 25 7 371 - -
Lja1g3396 384 Pfam Mitochondrial carrier protein 89 179 IPR018108 -
Lja1g3396 384 Pfam Mitochondrial carrier protein 183 270 IPR018108 -
Lja1g3396 384 Pfam Mitochondrial carrier protein 279 360 IPR018108 -
Lja1g3396 384 PANTHER ADP/ATP CARRIER PROTEIN 7 371 - -
Lja1g3396 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 83 176 IPR018108 -
Lja1g3396 384 SUPERFAMILY Mitochondrial carrier 88 354 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3396 Lja-Chr1 42346359 42352322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3396 5 378 Organic Solute Cotransporters AT3G51870 66.057 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3396 K14684 - gmx:100778912 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3396 1 42346359 42352322 Lja1g3396 1 42346359 42352322 ECH
Lja1g3396 1 42346359 42352322 Lja3g3217 3 62354774 62362373 PCT
Lja3g3309 3 65169089 65171851 Lja1g3396 1 42346359 42352322 PCT