Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3309 ATGTCTAATCTCTTTGCACATGCCATATTGGCAATAGGGAAGGAAGAAGGCATTAAAGGTTACTGGAAGGGCAACCTCCCACAGGTGATTCGGGTTATACCTTATAGTGCTGTCCAGCTTTTTGCTTATGAGTTTTATAAGAAAATATTCAAGGGAGAACATGATGAGCTCTCTGTTGTGGGAAGACTTGCAGCGGGTGCTTTTGCTGGCATGACATCAACTTTTATCACCTACCCATTAGATGTCCTGAGATTGCGGTTAGCTGTTGCCTTGAGCATGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGTCTTGGACCTTCTCTTATTGGAATAGCTCCATATATTGCAGTCAACTTTTGTGTTTTTGACTTGTTGAAGAAGTCATTGCCAGAGGAATATCAAAAGAGAACTGAAGCATCTCTTGTCACTGCGGTGTTTTCAGCATCTCTTGCCACACTTACATGCTATCCTCTGGACACTGTGCGAAGACAGATGCAATTGAAGGGTACACCTTATAAGACAGTATTAGATGCCATTTCAGGTATCGTGGCACGGGATGGAGTTATTGGCTTGTATCGTGGATTTCTGCCTAATGCTTTAAAGAACCTACCAAACAGCAGCATCAGGCTCACCATATATGATATTGCCAAACGCCTAATTGCAGCTAGTGAGAAAGAGTTTCAAATAATTACTGAGGATAACCGCAACAATCTACAGAAACAACAATAG 735 0.419 MSNLFAHAILAIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYEFYKKIFKGEHDELSVVGRLAAGAFAGMTSTFITYPLDVLRLRLAVALSMLREEGFASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEEYQKRTEASLVTAVFSASLATLTCYPLDTVRRQMQLKGTPYKTVLDAISGIVARDGVIGLYRGFLPNALKNLPNSSIRLTIYDIAKRLIAASEKEFQIITEDNRNNLQKQQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3309 244 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 130 IPR018108 -
Lja3g3309 244 PANTHER ADP/ATP CARRIER PROTEIN 5 234 - -
Lja3g3309 244 PANTHER SOLUTE CARRIER FAMILY 25 5 234 - -
Lja3g3309 244 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 49 IPR018108 -
Lja3g3309 244 ProSiteProfiles Solute carrier (Solcar) repeat profile. 137 221 IPR018108 -
Lja3g3309 244 PRINTS Mitochondrial carrier protein signature 72 90 IPR002067 GO:0055085
Lja3g3309 244 PRINTS Mitochondrial carrier protein signature 146 168 IPR002067 GO:0055085
Lja3g3309 244 PRINTS Mitochondrial carrier protein signature 24 44 IPR002067 GO:0055085
Lja3g3309 244 SUPERFAMILY Mitochondrial carrier 7 216 IPR023395 -
Lja3g3309 244 Pfam Mitochondrial carrier protein 5 52 IPR018108 -
Lja3g3309 244 Pfam Mitochondrial carrier protein 92 132 IPR018108 -
Lja3g3309 244 Pfam Mitochondrial carrier protein 141 223 IPR018108 -
Lja3g3309 244 Pfam Mitochondrial carrier protein 56 90 IPR018108 -
Lja3g3309 244 Gene3D Mitochondrial carrier domain 2 222 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3309 Lja-Chr3 65169089 65171851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3309 5 243 Organic Solute Cotransporters AT3G51870 73.092 1.20e-135 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3309 K14684 - gmx:100796878 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3309 3 65169089 65171851 Lja3g3309 3 65169089 65171851 ECH
Lja3g3309 3 65169089 65171851 Lja1g3396 1 42346359 42352322 PCT