Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3217 ATGGAAGCGCGTGTCGGCATGGTGATCGAAGGGGGAAAACAGAGACCCGTCAACGCCGACGTCGCCGCCGCCGCTAAGTTGTTGCCGCAGCAGAATAACCAGCTTGGAACTGTGAATCAGCTTCTGGCTGGTGGTGTCGCCGGCGCTTTCAGCAAAACCTGTACCGCACCCCTTGCGCGCCTCACTATCCTTTTTCAGGTCCAAGGGATGCATTCTGATTTTTCAGCATTGAGGAAGCCTAGCATATGGCAAGAGGCTTCACGTATTATCAATGAAGAAGGGTTTAGGGCATTTTGGAAAGGCAATATGGTGACCATTGTTCATCGTCTCCCTTATTCTGCAGTCAGCTTCTATTCCTATGAACGCTACAAGAATTTATTTCATTCACTGATGGGGGAGAATTATAGAGGAAGTTCCAGTGCAAACCTCTTTGTGCATTTTATGGGTGGTGGTTTGGCGGGTGTAACTTCTGCTTCTGCCACGTATCCTTTGGATCTTGTGAGAACACGGCTTGCAGCACAGAGAAGTACCATTTACTACAGAGGCATCTCACATGCTTTCAGTACCATCTGTAGAGATGAAGGTTTCTTGGGTCTGTACAAGGGACTTGGAGCAACATTGTTGGGTGTTGGGCCGAGTATAGCTATAAGTTTTTCTGTCTACGAGTCATTACGCTCTTTATGGATATCACGAAGGCCTGATGATTCTAGTGCTGTGGTTAGTCTTGCCTGTGGCAGTCTTTCAGGAGTTGCATCATCAACAGTAATATTTCCTTTGGATCTTGTAAGGCGAAGGATGCAGTTAGAGGGTGTTGGTGGTCGAGCTTGTGTCTATAACACTGGTATGTGTGGGGCATTTCAGTGCATAATTAAAAACGAAGGGGTCCGTGGTTTATATAGAGGCATTCTGCCTGAGTACTACAAGGTTGTTCCTGGTGTGGGAATTGCCTTTATGACTTATGAGACGTTGAAGAGGCTTCTATCAAGCACTCCAAGTTAA 999 0.4685 MEARVGMVIEGGKQRPVNADVAAAAKLLPQQNNQLGTVNQLLAGGVAGAFSKTCTAPLARLTILFQVQGMHSDFSALRKPSIWQEASRIINEEGFRAFWKGNMVTIVHRLPYSAVSFYSYERYKNLFHSLMGENYRGSSSANLFVHFMGGGLAGVTSASATYPLDLVRTRLAAQRSTIYYRGISHAFSTICRDEGFLGLYKGLGATLLGVGPSIAISFSVYESLRSLWISRRPDDSSAVVSLACGSLSGVASSTVIFPLDLVRRRMQLEGVGGRACVYNTGMCGAFQCIIKNEGVRGLYRGILPEYYKVVPGVGIAFMTYETLKRLLSSTPS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3217 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 35 126 IPR018108 -
Lja3g3217 332 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 2 331 - -
Lja3g3217 332 Gene3D Mitochondrial carrier domain 30 330 IPR023395 -
Lja3g3217 332 Pfam Mitochondrial carrier protein 141 229 IPR018108 -
Lja3g3217 332 Pfam Mitochondrial carrier protein 236 328 IPR018108 -
Lja3g3217 332 Pfam Mitochondrial carrier protein 34 128 IPR018108 -
Lja3g3217 332 PANTHER SOLUTE CARRIER FAMILY 25 2 331 - -
Lja3g3217 332 SUPERFAMILY Mitochondrial carrier 33 323 IPR023395 -
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 53 67 IPR002067 GO:0055085
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 40 53 IPR002067 GO:0055085
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 156 174 IPR002067 GO:0055085
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 245 267 IPR002067 GO:0055085
Lja3g3217 332 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Lja3g3217 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 326 IPR018108 -
Lja3g3217 332 ProSiteProfiles Solute carrier (Solcar) repeat profile. 141 227 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3217 Lja-Chr3 62354774 62362373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3217 146 330 Organic Solute Cotransporters AT3G55640 26.904 1.39e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3217 - K14684 gmx:100777563 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3217 3 62354774 62362373 Lja3g3217 3 62354774 62362373 ECH
Lja1g3396 1 42346359 42352322 Lja3g3217 3 62354774 62362373 PCT