Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3121 ATGGCAGAGGCAAAAACATGGTATGCTGTTGTTACTGGTGCAAACAAAGGGATAGGGTTGGAGACAGTTAAAGAGTTGGCCTCAAATGGAGTCAAGGTGGTACTCACAGCCAGAGATGAGAATAAAGGCCATGAAGCTATTGAGAAATTGAAAGTGTTTGGTCTCTCTGATCTGGTCACTTTTCACCAGCTTGATGTGACTGACCCTACTAGTATTGCTTCTCTAGTAGAGTTTGTTAAAACCCAGTTTGGTAGACTTGATATCTTGGTGAATAATGCAGGAATCAGTGGTGTCAATCCATATGAAACGGTGGGATCAATAATTAACTGGAAGGAACTGACTCAAACTTATGAGATGGCTGAAAAGTGCTTAAAAACAAACTACTATGGTGCTAGGGAAACAATTGAGGCATTTCTCCCACTCATTGAGTTGTCCAATTCACCTAGGATTGTCAATGTTTCCTCCCAAGCTGGGATGTTAAAGAACATACCAAATGAGTGGGCTAAAGGGGTGTTTGGTGATGCTGAAAATCTCACAGAAGAGAGAATAGATGAGATACTGAAGGAGTTTCTCAAAGACTTCAAAGAAGGTTCACTAGAAAACAAAGGCTGGCCAACTTTCCTCTCTGCCTATATAGTCTCAAAAGCAGCCATGAATTCTTACACAAGGATTATAGCCAAGAAGCACCTTAACATGTGTAGTAATTGTGTCTGCCCTGGTTTTGTTAAAACAGACATCAACAAAAACACTGGCATCTTATCTATTGACCAAGGTGCTGCTAATGTTGTGAGATTAGCTCTGCTTCCTTATGGTTCTTCCCCTTCTGGCCACTTCTTTATTAGGCAAGAAGAGGAAATGGGATTCTCTAGCGTCAGGGAGTATGCTGTTGTGACAGGGGCAAATAAGGGGATAGGTTATGGGATATGTAAGAAGCTGGTTTCAAGTGGGATTGTGGTGGTGCTGACAGCTAGAAATGAAGAGAGGGGCTTGGAAGCTGTAGAAACACTCAAAGAGCTTGGTCTCTCTCACCACCTGCTTTTTCATCAGCTTGATGTGGATGATCCTGCTAGCATTGCTTCCTTAGCTCATTTCATCAAGACCCAATTTGGGAAACTTGATATCTTGGTGAATAATGCAGGACTTCCTGGGGGAAAATTAAGAAATGGTGAAAAAATTGATTGGAATGAAGTAGGGTATCAACCCTATGAGTTAGGTGAAAAATGTTTGGAAACAAACTTTTATGGTGTAGAAAGAGTAACAGAAGCTCTTCTTCCCCTTCTCCAACTATCCACTTCTCCAAGAATTGTCAATATTTCCTCCAGAGCAGGACTCTTGAAGAATATATCAAATGACTGGGCTAAGACCATATTTGGTGACATTGAAAACCTCACAACACAAAAAATAGACAAGGTGCTTAAAGAGTTTCAGAAAGATCACAAAGAGGGATCATTGGAGATCAAAGGTTGGCCAACATTTGCTTCTGCTTACACAATCTCAAAAGCAGCTTTAAATGCTTATACAAGGATGATGGCAAACAAATACCCTCATTTTCAAATAAATTCTGTGTGCCCTGGTTTTGTCAAGACTGATATGAATAACAACACTGGAAACTTAAGCATTGATGAAGGTGCTGAAACTCCTGTGATGTTGGCACTGTTGCCAAATAGGGGTCTTTCTGGTTGTTTCTTTAATCAGGGTCAAGTAATACCCTTTTGA 1716 0.4068 MAEAKTWYAVVTGANKGIGLETVKELASNGVKVVLTARDENKGHEAIEKLKVFGLSDLVTFHQLDVTDPTSIASLVEFVKTQFGRLDILVNNAGISGVNPYETVGSIINWKELTQTYEMAEKCLKTNYYGARETIEAFLPLIELSNSPRIVNVSSQAGMLKNIPNEWAKGVFGDAENLTEERIDEILKEFLKDFKEGSLENKGWPTFLSAYIVSKAAMNSYTRIIAKKHLNMCSNCVCPGFVKTDINKNTGILSIDQGAANVVRLALLPYGSSPSGHFFIRQEEEMGFSSVREYAVVTGANKGIGYGICKKLVSSGIVVVLTARNEERGLEAVETLKELGLSHHLLFHQLDVDDPASIASLAHFIKTQFGKLDILVNNAGLPGGKLRNGEKIDWNEVGYQPYELGEKCLETNFYGVERVTEALLPLLQLSTSPRIVNISSRAGLLKNISNDWAKTIFGDIENLTTQKIDKVLKEFQKDHKEGSLEIKGWPTFASAYTISKAALNAYTRMMANKYPHFQINSVCPGFVKTDMNNNTGNLSIDEGAETPVMLALLPNRGLSGCFFNQGQVIPF* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3121 571 PRINTS Glucose/ribitol dehydrogenase family signature 496 515 IPR002347 -
Lja1g3121 571 PRINTS Glucose/ribitol dehydrogenase family signature 427 443 IPR002347 -
Lja1g3121 571 PRINTS Glucose/ribitol dehydrogenase family signature 515 532 IPR002347 -
Lja1g3121 571 PRINTS Glucose/ribitol dehydrogenase family signature 294 311 IPR002347 -
Lja1g3121 571 PRINTS Glucose/ribitol dehydrogenase family signature 370 381 IPR002347 -
Lja1g3121 571 CDD carb_red_PTCR-like_SDR_c 8 279 IPR045313 GO:0016616
Lja1g3121 571 CDD carb_red_PTCR-like_SDR_c 293 571 IPR045313 GO:0016616
Lja1g3121 571 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 283 - -
Lja1g3121 571 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 291 571 - -
Lja1g3121 571 Pfam Enoyl-(Acyl carrier protein) reductase 487 536 - -
Lja1g3121 571 Pfam short chain dehydrogenase 9 161 IPR002347 -
Lja1g3121 571 Pfam short chain dehydrogenase 294 447 IPR002347 -
Lja1g3121 571 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 271 IPR036291 -
Lja1g3121 571 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 483 511 IPR020904 GO:0016491
Lja1g3121 571 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 294 563 IPR036291 -
Lja1g3121 571 Gene3D - 290 571 - -
Lja1g3121 571 Gene3D - 3 287 - -
Lja1g3121 571 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 370 381 IPR002347 -
Lja1g3121 571 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 433 441 IPR002347 -
Lja1g3121 571 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 496 515 IPR002347 -
Lja1g3121 571 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 2 283 - -
Lja1g3121 571 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 291 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3121 Lja-Chr1 38101502 38124168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3121 295 533 Miscellaneous Gene Families AT2G29150 25.620 1.74e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3121 K15095 - qsu:111996010 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3121 1 38101502 38124168 Lja1g3121 1 38101502 38124168 ECH
Lja1g3121 1 38101502 38124168 Lja3g1925 3 22150626 22152742 PCT
Lja3g1930 3 22190551 22193636 Lja1g3121 1 38101502 38124168 PCT