Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1925 ATGGGAGAAGAAGGAAAGAGGTATGCGGTAGTGACTGGTGCTAATAAGGGGATTGGTTATGGGATAAGCAAGAAATTGGCTTCAACTGGTATCATGGTGGTGCTTACAGCTAGAAATGAGAAGAGGGGTTTGGAAGCAGTGGAAAGCTTGAAGGAGTTAGGCCTCTCAGACTTTGTGGTTTATCATCAACTTGATGTGACTGACCCTACCAGTGTTGCTGCTTTAGCAGATTTCATCAAAACCAGATTTGGAAGACTTGATATCTTGGTCAACAATGCAGGTATTGGTGGTGGAATAGTCGATGGAGATAAATGTTATAGGAAGCATTGCGGTGAACAAATCGATTGGAATGAAATTATGAGTGAAAACTATGAGTCAGCCAAAGAATGTGTTGAAACAAATTTCTTTGGTGCTGAAAGAGTAACTGAAGCTCTTCTTCCCCTGCTTCAACTCTCAACCTCACCCAGGATTGTTAACGTCTCCGGTAAAATTGGACAATTGAAGTATATGCCAAATGACTGGGCAAGAGGAGTGTTTAGTGACATTGAAAACCTTACCAATGAAAAACTCGGCGAGGTGCTTAGGGAGTTTCTGAAAGATTACAAAGAAGGATCACTGGAAACCAACAACTGGCCATCTTTTTATAAAGGCTACACCATGTCAAAAACAGCTTTAAATGCCTACACAAGGATGCTGGCAAAGAAGTTCCCTCAATTTCGCATAAATTGTCTATGCCCTGACTATGTCAAAACTGATATTAACCATAACACAGGCACTATAAGCATTGATGAAGGTGCTGAAAGCCCTGTTAGGCTAGCATTGCTACCAGATGATGGTCCAACTGGTCTTTTCTTTTCTAGGGATGAAGAGTTTCCCTTTTGA 882 0.4138 MGEEGKRYAVVTGANKGIGYGISKKLASTGIMVVLTARNEKRGLEAVESLKELGLSDFVVYHQLDVTDPTSVAALADFIKTRFGRLDILVNNAGIGGGIVDGDKCYRKHCGEQIDWNEIMSENYESAKECVETNFFGAERVTEALLPLLQLSTSPRIVNVSGKIGQLKYMPNDWARGVFSDIENLTNEKLGEVLREFLKDYKEGSLETNNWPSFYKGYTMSKTALNAYTRMLAKKFPQFRINCLCPDYVKTDINHNTGTISIDEGAESPVRLALLPDDGPTGLFFSRDEEFPF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1925 293 PANTHER OXIDOREDUCTASE-RELATED 1 290 - -
Lja3g1925 293 Pfam short chain dehydrogenase 8 169 IPR002347 -
Lja3g1925 293 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Lja3g1925 293 Gene3D - 4 293 - -
Lja3g1925 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Lja3g1925 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Lja3g1925 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Lja3g1925 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Lja3g1925 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Lja3g1925 293 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Lja3g1925 293 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Lja3g1925 293 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Lja3g1925 293 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Lja3g1925 293 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 290 - -
Lja3g1925 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 282 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1925 Lja-Chr3 22150626 22152742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1925 10 169 Acyl Lipid Metabolism Gene Families AT1G24360 28.144 6.83e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1925 K15095 - gmx:100802560 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1925 3 22150626 22152742 Lja3g1925 3 22150626 22152742 ECH
Lja1g3121 1 38101502 38124168 Lja3g1925 3 22150626 22152742 PCT