Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1930 ATGGTAATGGCAGACAACAAAAAACAAAGGTATGCTGTTGTTACAGGTTCTAACAAAGGGATAGGAATTGAGACTGTGAAAGGGTTGGCCTCTAATGGAATCAAGGTGGTGCTCACAGCCAGAGATGAGAAGAGAGGGATTCAAGCTGTTGAGAGATTGAAAGGGTGTGGTTTCTCCTCTAGCCTTGTGGTTTTTCACCAGCTTGATGTCACTGACCCTGCTAGTATTGCATCCTTGGTTGATTTTGTTAAGACCCAATTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAATGGGTTCAACACACATGATATGGTGGGACAAACAATTAAATGGAGGGAATTGCCTCAAACTTATGAAATGGCTGAACAATGCCTAACAACAAATTACTATGGTGTTCAACAAACAACTGAGGCTTTTCTTCCTCTTCTTAAGTTATCCGATTCACCCGTGATTGTTAATGTTTCCTCCGAAGCAGGGCTCTTAAAGTATATATCAAACGAATGGGCTAAGAGGGTGTTTGAAGATACTGACATTCTTACAGAAGAGCTAATAGATGAAGTTTTGAAGGAGTATATGAAAGACTTCAAACAAGGTTCCCTAGAACATAAGGGTTGGCCAACCTATCTATCTGCATATAAGCTCTCAAAAGCAGCTGTGAATACCTACACAAGGCTTATGGCCTATAAGCATCCAAAGTTCTGCATTAATTGTGTTTGCCCTGGTTTTGTCAAGACAGACATGAACAGAAACACAGGAAGCTTATCTGTTGAGAAAGGTGCTGCTAGTGTTGTGAGATTAGCACTGCTGCCACATGGTTCCCCTTCTGGCTACTTCTTTGCTAGCCAAGATGTGTCTACCTTTTGA 873 0.4147 MVMADNKKQRYAVVTGSNKGIGIETVKGLASNGIKVVLTARDEKRGIQAVERLKGCGFSSSLVVFHQLDVTDPASIASLVDFVKTQFGRLDILVNNAGINGFNTHDMVGQTIKWRELPQTYEMAEQCLTTNYYGVQQTTEAFLPLLKLSDSPVIVNVSSEAGLLKYISNEWAKRVFEDTDILTEELIDEVLKEYMKDFKQGSLEHKGWPTYLSAYKLSKAAVNTYTRLMAYKHPKFCINCVCPGFVKTDMNRNTGSLSVEKGAASVVRLALLPHGSPSGYFFASQDVSTF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1930 290 CDD carb_red_PTCR-like_SDR_c 10 290 IPR045313 GO:0016616
Lja3g1930 290 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 276 IPR036291 -
Lja3g1930 290 Gene3D - 2 290 - -
Lja3g1930 290 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 6 290 - -
Lja3g1930 290 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 6 290 - -
Lja3g1930 290 PRINTS Glucose/ribitol dehydrogenase family signature 146 162 IPR002347 -
Lja3g1930 290 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Lja3g1930 290 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Lja3g1930 290 PRINTS Glucose/ribitol dehydrogenase family signature 215 234 IPR002347 -
Lja3g1930 290 PRINTS Glucose/ribitol dehydrogenase family signature 234 251 IPR002347 -
Lja3g1930 290 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Lja3g1930 290 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 IPR002347 -
Lja3g1930 290 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 234 IPR002347 -
Lja3g1930 290 Pfam short chain dehydrogenase 11 167 IPR002347 -
Lja3g1930 290 Pfam Enoyl-(Acyl carrier protein) reductase 204 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1930 Lja-Chr3 22190551 22193636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1930 8 252 Acyl Lipid Metabolism Gene Families AT1G63380 24.900 5.66e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1930 K15095 - gmx:111064653 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1930 3 22190551 22193636 Lja3g1930 3 22190551 22193636 ECH
Lja3g1930 3 22190551 22193636 Lja1g3121 1 38101502 38124168 PCT