Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3092 ATGTCTCAAACCAAATCTTATGCTGACATTCCCATTGTAGACATTTCTCAACCACTTCAGTCACCTTCTATGTCCTCTCTCTCTAAAGCATGCAAAGATTGGGGGTTTTTCCACATAATCAACCATGGAATCTCAAAAGATATTGGCAGCCAGCTCCAGTCACAATCCAAACAACTCTTCAACCTCCCATCTGATACTAAACTTCAACTTGGTCCTTTTTCATCTCTAAAATCCTACACCCCTCACTTCATTGCCTCTCCATTCTTTGAGAGCCTCAGAGTTGATGGACCTAACTTTTATGCTTCTGCCAAGAGTTCTGCAGAAACTCTCCTTTACAAACAGGATTCCAAATTCAGTGAGATATTGCAAGAATATGGAAGTCAGATGGAAGATTTGTCTAGGAAAATTCTAAAGCTTGTGTTGATGAGCTTAGGGGAAGGCATTGAGAAGAAGTTTTATGATTCTGAATTCAAGAAGTGCCATGGTTACTTGAGGATAAACAATTACTCTGCTCCTTCAGAAATTATGAAAGATCAAGTTGAGGGGCTTGGGCTGCATACTGATATGAGTTGCATTACTATCTTATATCAAGATGAAATCGGAGGGCTTCAAGTGAGATCAAATGAGGGAGAGTGGATAGACATGTTTCCATCTGAGGGGACCCTAGTGGTGAACATAGGGGACATACTTCAAGCTTGGAGCAATGACAAATTAAGATCCTCAGAACATAGAGTTGTTTTGAAGCATCCTGTGAGCAGGTTTTCTCTAGCATTCTTCTGGTGTGTTGAGGATGACAAAGTGATTCTGGCACCAGATGATGTTATTGGAGAAGGAAATAAAATGAAGTATAAACCATTTGTTTGCTTGGACTATTTGAAATTTAGAGAGAATAATGAGAAAGGAAGATTTGAAAAGGTGGGTTTCACAGTCAGAGATTTTGCTGGAATAAAAGCTCACCTGTGA 963 0.3967 MSQTKSYADIPIVDISQPLQSPSMSSLSKACKDWGFFHIINHGISKDIGSQLQSQSKQLFNLPSDTKLQLGPFSSLKSYTPHFIASPFFESLRVDGPNFYASAKSSAETLLYKQDSKFSEILQEYGSQMEDLSRKILKLVLMSLGEGIEKKFYDSEFKKCHGYLRINNYSAPSEIMKDQVEGLGLHTDMSCITILYQDEIGGLQVRSNEGEWIDMFPSEGTLVVNIGDILQAWSNDKLRSSEHRVVLKHPVSRFSLAFFWCVEDDKVILAPDDVIGEGNKMKYKPFVCLDYLKFRENNEKGRFEKVGFTVRDFAGIKAHL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3092 320 Pfam 2OG-Fe(II) oxygenase superfamily 165 260 IPR044861 -
Lja1g3092 320 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 2 313 - -
Lja1g3092 320 SUPERFAMILY Clavaminate synthase-like 5 297 - -
Lja1g3092 320 Gene3D - 1 301 IPR027443 -
Lja1g3092 320 Pfam non-haem dioxygenase in morphine synthesis N-terminal 10 72 IPR026992 -
Lja1g3092 320 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 263 IPR005123 -
Lja1g3092 320 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 2 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3092 Lja-Chr1 37624909 37626222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3092 9 291 Glycosyltransferase AT5G59530 27.027 1.83e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3092 - - gmx:100812108 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3092 1 37624909 37626222 Lja1g3092 1 37624909 37626222 ECH
Lja4g0405 4 3253512 3256491 Lja1g3092 1 37624909 37626222 ECH
Lja1g3092 1 37624909 37626222 Lja3g1892 3 21697004 21698263 PCT