Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0405 ATGTCTTCCCCAACCAAGCGCCGAGACATGGATTTCATGAAGCTGATGATGAGTGATTACAAGGTGGAAACTATCAATGATGACATGCAAGAGTTCTTTGTGGAATTTCATGGACCTAAGAACAGTCCTTATCAAGATGGTGTTTGGAAATTAAAAGTGGAGATACCAGATGCTTATCCTTTTAAGTCTCCATCCATTGGTTTCGTCAACAAAATTTACCATCCTAATATTGATGAACCGTCTGGTACAATTTGCTTGGATGTTATTAATCAGAGATGGAGTCCCATGTATGACCTTATTAACGTGTTCGAAGTTTTTCTTCCTCAACTCCTTCTGTACCCCAATGCATCAGATCCAATGAATGCTGATGCTGCTGATTTGATGCTGAAAGATCCTGCTGCTTATGAACAAAAAGTCAGAGAATATTGTGAAAAATATGCCAAGCCGGAAGATATTGGAGCTACTCAGGAGGAAAGTTCTACTGATGATGATGATGATGAGGATGAGGATGAGGATGAGGATGATGGGGCGAGTGAAGATGATTATGCCTCTAGCGATGATGGTATTGCAGGCGAACCTGATCCATAG 588 0.4099 MSSPTKRRDMDFMKLMMSDYKVETINDDMQEFFVEFHGPKNSPYQDGVWKLKVEIPDAYPFKSPSIGFVNKIYHPNIDEPSGTICLDVINQRWSPMYDLINVFEVFLPQLLLYPNASDPMNADAADLMLKDPAAYEQKVREYCEKYAKPEDIGATQEESSTDDDDDEDEDEDEDDGASEDDYASSDDGIAGEPDP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0405 195 MobiDBLite consensus disorder prediction 146 195 - -
Lja4g0405 195 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lja4g0405 195 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lja4g0405 195 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lja4g0405 195 CDD UBCc 10 143 IPR000608 -
Lja4g0405 195 Pfam Ubiquitin-conjugating enzyme 13 142 IPR000608 -
Lja4g0405 195 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Lja4g0405 195 SMART ubc_7 4 148 - -
Lja4g0405 195 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4-RELATED 3 176 - -
Lja4g0405 195 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 176 - -
Lja4g0405 195 MobiDBLite consensus disorder prediction 156 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0405 Lja-Chr4 3253512 3256491 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0405 K10576 - gmx:100791133 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0405 4 3253512 3256491 Lja4g0405 4 3253512 3256491 ECH
Lja4g0405 4 3253512 3256491 Lja1g3092 1 37624909 37626222 ECH