Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0061 ATGGTTCTCTTCCTCTGCAACCCCATACTTGTTCTTCTCACACCCTTCTTCCTCTTCCTCTTCCTTCTACTCTCCATTCGATGGTGGAGACCCATCCAAGATTGGTTCCACGTCTACCAATTCTTCAGAGTCCCACTACTCAACCAAACCATGCAACACAATCATCTCTACAGAAACCTCTCCCTCTACTTGCATTCCCTCCCTTCCATTCAGGACTCTGATTTCTCCAACCTCCTCACTGGCCCCACCCAACACGACGTCATCCTCTCCCTCGGCCCCAACCAAACCATCCACGACCACTTCCTCGGAGCCACCGTTTCCTGGTCCAACGAGCCCACAGCCTTCGTCCTCAAGATCAGAAAATCCGACAGGCGCAGAATCCTCCGCCCCTACCTCCACCACATCAGCGCCGTCGCCGCCGAAATCAACCAGCAAGGGAACCGCGACTTGCGTCTCTTCGTCAACGCCGACGCCGACGGAACCTCCTGGAGATCCGTTCCCTTCACCCACCCCTCCACCTTCGACACCATCGCCATGGAGCCTGATCTCAAAAGCAGAGTCAAATCCGATCTCGAATCGTTCCTCAAGGCGAAACAGTACTACCATCGCCTTGGTCGCGTTTGGAAACGAAGCTTCCTCCTGTACGGCCCCTCCGGCACCGGGAAGTCAAGCTTCGTTGCCGCCATGGCCAATTTCCTCTGCTACGACGTCTACGACATCGACCTCTCCAAGGTTCCTGGAGATTCGGATCTCAAACTCCTCCTCCTCCAAACGACGCCGAGATCGATCGTGGTTGTAGAGGATCTGGACCGGTTCCTGGCGGAGAAATCGACGGCGGGGATGCTGAACTTCATGGACGGGGTTCTGAGCTCGTGCTGCGGCGAGGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAGAACGTGGACCCGAACCTGCTTCGTCCGGGTCGGGTCGACGTGCACATTCATTTCCCGCTGTGCGATTTCTCTGCGTTCAAGACGTTAGCGAGCAGCTACCTTGGCGTGAAGGAGCACAAGCTGTTCCCGCAGGTGGAGGAGATATTCCAGAACGGAGCGAGTTTGAGCCCCGCCGAGATCGGTGAGTTGATGATCGCGAACCGGAGCTCGCCGAGTCGGGCAATCAAATCGGTCATCACGGCCTTGCAAACGGACGGCGATGGCAGGGGGCGCGGGTTGAACCAACAGCACACGGGGGATGATGAGTTGGATGAGGATGATGGTCTCCGTACAGCGAAGGATTTGCGGAAATTGTACGGTTTTTTCAGATTGAGGGTTGCGAGAAGATCTTCGTCTTCCCCTAATAGTACATTGGCAAGTCCATTGCGATGA 1353 0.558 MVLFLCNPILVLLTPFFLFLFLLLSIRWWRPIQDWFHVYQFFRVPLLNQTMQHNHLYRNLSLYLHSLPSIQDSDFSNLLTGPTQHDVILSLGPNQTIHDHFLGATVSWSNEPTAFVLKIRKSDRRRILRPYLHHISAVAAEINQQGNRDLRLFVNADADGTSWRSVPFTHPSTFDTIAMEPDLKSRVKSDLESFLKAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLCYDVYDIDLSKVPGDSDLKLLLLQTTPRSIVVVEDLDRFLAEKSTAGMLNFMDGVLSSCCGEERVMVFTMNSKENVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKEHKLFPQVEEIFQNGASLSPAEIGELMIANRSSPSRAIKSVITALQTDGDGRGRGLNQQHTGDDELDEDDGLRTAKDLRKLYGFFRLRVARRSSSSPNSTLASPLR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0061 450 Gene3D - 324 387 - -
Lja1g0061 450 PANTHER BNAC04G00800D PROTEIN 14 412 - -
Lja1g0061 450 MobiDBLite consensus disorder prediction 392 413 - -
Lja1g0061 450 Gene3D - 164 323 IPR027417 -
Lja1g0061 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 388 IPR027417 -
Lja1g0061 450 Pfam ATPase family associated with various cellular activities (AAA) 213 327 IPR003959 GO:0005524|GO:0016887
Lja1g0061 450 PANTHER BCS1 AAA-TYPE ATPASE 14 412 - -
Lja1g0061 450 Pfam Domain associated at C-terminal with AAA 24 109 IPR025753 -
Lja1g0061 450 SMART AAA_5 208 329 IPR003593 -
Lja1g0061 450 CDD AAA 209 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0061 Lja-Chr1 560835 562705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0061 - K08900 gmx:100805212 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0061 1 560835 562705 Lja1g0061 1 560835 562705 ECH
Lja3g1728 3 19339959 19342073 Lja1g0061 1 560835 562705 ECH
Lja1g0061 1 560835 562705 Lja3g3747 3 74076663 74079256 PCT