Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1728 ATGGTTCCTTGGAGACCCATATTCCTCGTTATCCTCATCACTGGTCTCCTTTGTTTCGTGATTCGTTTGATCCTATTCAAAACTGGATTGTTCCACACCGTGAACAAACTTCACAGAACGTTCCAAGATTGGTTCCACGTGTACCAGTTCCTCAAGGTTCCTGAATTCAACGAAAGCATGCAGCGAAACCACCTTCATCGTAAGGTTTCTCTCTATTTGCATTCTCTTCCTTCGATTGAAGACTCTGATTTCACCAACCTCATCACCGGGAACACCCAAAACGACATCGTTTTATGCCTCGACCAGAATCAAACCATAGAGGACCAATTTCTCGGTGCCACGATTTTCTGGTTCAACCAGAAAACTGAACCGGACCGGACCGGAGGGTTTGTGTTGAAAATCAGAAAGGCTGATAAACGCCGCATCCTCCGCCCTTATCTCAGCCACATCAACGCCGTCGCCGACGAGATTGACAGCCAAGGGAAACGCGATTTGCGCGTGTTCGTCAACGGCGGCGGCGGAACGCGGTGGAGATCGGTCCCGTTCAATCATCCGGCGACGTTTGAAACCATGTCGATGGAGGAAGATCTCAAGGAGAAAATCAAATCGGATCTGGAATCGTTTCTGAAAGGGAAGCAATACTACCGGAGACTCGGCCGCGCGTGGAAACGGAGCTTCCTGCTGTATGGCCCTTCCGGCACCGGGAAATCGAGCTTTGTTGCGGCGATGGCGAATTTCATGTGTTACGATGTGTACGACGTGGATCTCTCCAAGGTTCGCGGCGATTCGGATCTGAAAGTGCTCCTTCTCGAAACGACGGCGAAGTCGATCATCGTCGTGGAGGATCTCGACCGGTTTCTGACGGTGGGATCGGAACCAGCGGCGGTGACGGCGTCGGGGATTCAGAATTTCATGGACGGGATTCTGAGCTCGTGCTGCGGTGAAGAAAGAGTGATGGTTTTCACGATGAATAGCAAAGATGGTATCGACCCGAATTTGCTACGTCCGGGTCGGGTCGACGTGCATATCCATTTCCCGGTTTGCGATTTCTCGGCGTTCAAGACGCTAGCGAGTAGCTACCTAGGGGTGAAGGAGCACAAGCTGTTTCCTCAGGTGGAGGAGATTTTCCGGCAAGGAGCGAGTTTGAGTCCGGCGGAGATCAGTGAGTTGATGATCGCGAATCGGAACTCGCCGAGTCGGGCTATAAAATCGGTAATCGGGGCGCTGCAAACGGACGGTGATGGGAGGGGGTGTGGGGATGTGATCGGACGGCAGGGAGGGGATGATGATGAAGCGGTGCCTGAAGGGTTGTTGTGTGGTGGTGAGGGGTTCTCTGCGGTTAAGGATTTGCGGAAGTTGTACGGTTTGTTTAGATTAAGGAACTCTAGGAAATCTCGCTCGTCTAGTAATAACTTGGTCCATGAAAGATGA 1431 0.5185 MVPWRPIFLVILITGLLCFVIRLILFKTGLFHTVNKLHRTFQDWFHVYQFLKVPEFNESMQRNHLHRKVSLYLHSLPSIEDSDFTNLITGNTQNDIVLCLDQNQTIEDQFLGATIFWFNQKTEPDRTGGFVLKIRKADKRRILRPYLSHINAVADEIDSQGKRDLRVFVNGGGGTRWRSVPFNHPATFETMSMEEDLKEKIKSDLESFLKGKQYYRRLGRAWKRSFLLYGPSGTGKSSFVAAMANFMCYDVYDVDLSKVRGDSDLKVLLLETTAKSIIVVEDLDRFLTVGSEPAAVTASGIQNFMDGILSSCCGEERVMVFTMNSKDGIDPNLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVKEHKLFPQVEEIFRQGASLSPAEISELMIANRNSPSRAIKSVIGALQTDGDGRGCGDVIGRQGGDDDEAVPEGLLCGGEGFSAVKDLRKLYGLFRLRNSRKSRSSSNNLVHER* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1728 476 CDD AAA 223 346 - -
Lja3g1728 476 Gene3D - 178 347 IPR027417 -
Lja3g1728 476 SMART AAA_5 222 349 IPR003593 -
Lja3g1728 476 Pfam ATPase family associated with various cellular activities (AAA) 227 346 IPR003959 GO:0005524|GO:0016887
Lja3g1728 476 Pfam Domain associated at C-terminal with AAA 29 118 IPR025753 -
Lja3g1728 476 PANTHER BNAC04G00800D PROTEIN 9 433 - -
Lja3g1728 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 404 IPR027417 -
Lja3g1728 476 PANTHER BCS1 AAA-TYPE ATPASE 9 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1728 Lja-Chr3 19339959 19342073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1728 187 368 Miscellaneous Gene Families AT5G58870 27.778 7.86e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1728 - K08900 gmx:100787809 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1728 3 19339959 19342073 Lja3g1728 3 19339959 19342073 ECH
Lja3g1728 3 19339959 19342073 Lja1g0061 1 560835 562705 ECH