Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3747 ATGTCCAACACCAACACCAAGTCACTTTTATCTGCTGCGGCCTCTCTTGCAGCCACAGCTATGCTGATTCGAAGCATCACGAACGATTTCATCCCCCATGAACTCATAGACTTCATTAACTTGAAATTTTATAATCTCTCTCGTTGTTTCTCAACCCAGTTCACGGTTGTCATCGAAGAATTTCAAGGAATGACGAAGAACGAAGTCTATGAGGCTGCAGAAGCCTACCTGAGCACCAAAGCCACCCTCTCAGCACAGAGAGTTAAAGCAGGCAAATCCGAGGATGACAAAACGCTCTCATTTGGCGCAGACCGAGACGAAGAAGTGACTGATGATTTTGAAGGCGTTCGCGTAACGTGGAAACTCACCTGCATTCGAGTCGACTCCTCATCATCTCGCACCAGATACACCAACATGAGTTCCTCTCTAATGTCAGAAGTAAGATCCTACGAGCTGAGCTTTCACAAGAAGCACAAGGAGAAAATGTTCAATTCATATTTGCCTTATGTGTTGGAGAGAGCCAAGGCTATCAAACAAGAGAATATGGCAGTGAAGATTTACACGGTGGAGTACGAGGCGTGGTGTAGAAACGGTACTAGATTCGATCACCCCATGACTTTCAAGACACTTGCAATTGACGCAGGGCTTAAGAAGGAACTGGTGAGTGATTTGGACAGGTTTTTACAGGGGAAGGAGTTCTATAACAGAACTGGGAAAGCTTGGAAACGCGGTTACCTTTTGTATGGTCCTCCAGGAACTGGAAAATCGAGTTTGATAGCGGCCATGGCAAACTATCTCAGCTATGATATCTATGACTTGGACCTCACGGCTTTGAATGACAATAAGGACTTGAAGAATCTGCTCCTTGCCATGTCCAACCGTTCCATACTTGTGATAGAGGATATTGACTGCTCCATCAAGCTGCCGAACAGAGAAGAAGATGAGGAAGCGGCTAAAAATGGAGACAATAAGATGACACTTTCAGGACTACTAAACGTAATAGATGGCCTATGGTCATGCTGTGGAGAGGAACGCATCATCATTTTCACAACAAATCACAGAGAAAGGCTTGATCCAGCTCTGCTAAGGCCTGGCCGGATGGACATGCATGTTAACTTATCATACTGCACTTTTTCTGCTTTCGAGCAACTCGCCTTCACCTACCTCGGCATTTCTCAGCATAAACTCTTTGAACAGATTGGAGGGCTTCTTAGGCATGTTCAAGTGACTCCAGCAGAAGTTGCAGGACAATTAACTAAGATTGCTGATGTTGAAGAATGCCTACACGGCCTTGTCAAATTTCTCCAAGATAAAACTCAGAATGACCAGAATATCAACCAAGATAATGCATCTCAAAAAGAAAAGAAAAACCAAGATCATGAATATGGCATAGATAATTTATGA 1404 0.4402 MSNTNTKSLLSAAASLAATAMLIRSITNDFIPHELIDFINLKFYNLSRCFSTQFTVVIEEFQGMTKNEVYEAAEAYLSTKATLSAQRVKAGKSEDDKTLSFGADRDEEVTDDFEGVRVTWKLTCIRVDSSSSRTRYTNMSSSLMSEVRSYELSFHKKHKEKMFNSYLPYVLERAKAIKQENMAVKIYTVEYEAWCRNGTRFDHPMTFKTLAIDAGLKKELVSDLDRFLQGKEFYNRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLSYDIYDLDLTALNDNKDLKNLLLAMSNRSILVIEDIDCSIKLPNREEDEEAAKNGDNKMTLSGLLNVIDGLWSCCGEERIIIFTTNHRERLDPALLRPGRMDMHVNLSYCTFSAFEQLAFTYLGISQHKLFEQIGGLLRHVQVTPAEVAGQLTKIADVEECLHGLVKFLQDKTQNDQNINQDNASQKEKKNQDHEYGIDNL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3747 467 Gene3D - 198 371 IPR027417 -
Lja3g3747 467 MobiDBLite consensus disorder prediction 452 467 - -
Lja3g3747 467 CDD AAA 242 375 - -
Lja3g3747 467 SMART AAA_5 241 377 IPR003593 -
Lja3g3747 467 Pfam ATPase family associated with various cellular activities (AAA) 246 374 IPR003959 GO:0005524|GO:0016887
Lja3g3747 467 Gene3D - 372 440 - -
Lja3g3747 467 Pfam Domain associated at C-terminal with AAA 31 123 IPR025753 -
Lja3g3747 467 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 5 448 - -
Lja3g3747 467 PANTHER BCS1 AAA-TYPE ATPASE 5 448 - -
Lja3g3747 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 424 IPR027417 -
Lja3g3747 467 MobiDBLite consensus disorder prediction 442 467 - -
Lja3g3747 467 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3747 Lja-Chr3 74076663 74079256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3747 209 373 Miscellaneous Gene Families AT3G47060 32.571 2.39e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3747 K08900 - gmx:100778503 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0061 1 560835 562705 Lja3g3747 3 74076663 74079256 PCT