LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele56g1407	ATGGCTCGTCTCACTTCTCCTCCGTTTTCTCTGATTTTGATTCTTTCAGCTTCGTGGTTACTTCTTCCGGCAGAATCAGCCACATATTGGGGTGACCGAGAGGCTCTAAAGCAGCTTAAGAACGGCTTTCAGAATGCTTCCGTGAATCCAGGTTCGTGTGTTAGTTCTTGGGACTTCTCTGTCGACCCCTGCGACAACCTCTTGAGCAAAAAATTCACGTGCGGCTTCCGATGCGACGTTGTCGTCTCCGGGTCGAGTCGGGTCACCGAGATCACTCTCGACCAGGCGGGTTACGCCGCCTCACTCGCTTCCTCGTCTTGGAACCTTCCTTATTTGGAAACTCTCGACGTGTCTAACAACTACTTTTCCGGTGGCATTCCTGAGACCTTCGCCAACCTGACTCGTCTTCGCCGGCTCGCTCTGTCCGGGAATTTGTTGGACGGTGAGATTCCCTCTTCCATTGGGTTCCTCTCCAATCTTGAAGAGCTTTACCTCGATAACAATAATCTTCAAGGGACAATCCCGCCCAGCCTGAACGGGCTCAAGAGCTTGAAAAGGCTCGAACTTCAACTCAACAATCTCCAGGGTGAGATTCCTGATCTCGGTTCTCTCGAGAACCTTTACTATCTCGACATCAGCGACAACGCTGTCACTGGCGGAATTCCGGCGACGTTGCCCAAATCCTTGGTTCAAATCTCAATGAGGAACAATAGCCTGAGCGGAGGTTTAAGATCGGAAAGCTTCAGGGGGCTGACGGATTTGCAGGTTCTGGATTTGAGTTACAACAGTCTGAAGGACTCTGCGCCTGTGGTTCTATTTGAGCTGCCGTCGCTGGAGCAACTGAGTCTGTCGTTCAACAAATTATCGGCCATGGAAGCGCCATCTTACAATGCTGGATCGCAGAGTGGGCTAATAGCGGTCGATGTGAGCAACAACGAGATTCAAGGGCTGTTGCCTTGGTTCATGGGAGTGATGCCAAAGCTGTCGTCATTGTCGTTGGAGAACAACAAGTTTACGGGAATGATACCGACGCAGTACGCATTAAAGACGGTGTTTCCGGAGATGGGAATATCGCCGTTTGAGAGGCTAATATTGAGCGGCAACTACCTGATTGGGGGCATACCCAGCCCCCTGCTGGTACTCAAACCGGGTTCTGCGAATGTGACGTTAGGGGACAATTGCTTGTTCAGATGCCCCCTGAGGTTCTTTTTCTGTGACCAACAAAAATCATTGGACGTATGCAACAGATTTAGCCCCTTCATCCCTTAG	1269	0.5075	MARLTSPPFSLILILSASWLLLPAESATYWGDREALKQLKNGFQNASVNPGSCVSSWDFSVDPCDNLLSKKFTCGFRCDVVVSGSSRVTEITLDQAGYAASLASSSWNLPYLETLDVSNNYFSGGIPETFANLTRLRRLALSGNLLDGEIPSSIGFLSNLEELYLDNNNLQGTIPPSLNGLKSLKRLELQLNNLQGEIPDLGSLENLYYLDISDNAVTGGIPATLPKSLVQISMRNNSLSGGLRSESFRGLTDLQVLDLSYNSLKDSAPVVLFELPSLEQLSLSFNKLSAMEAPSYNAGSQSGLIAVDVSNNEIQGLLPWFMGVMPKLSSLSLENNKFTGMIPTQYALKTVFPEMGISPFERLILSGNYLIGGIPSPLLVLKPGSANVTLGDNCLFRCPLRFFFCDQQKSLDVCNRFSPFIP	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele56g1407	422	Gene3D	Ribonuclease Inhibitor	31	201	IPR032675	-
	Lele56g1407	422	Pfam	Leucine rich repeat	158	216	IPR001611	GO:0005515
	Lele56g1407	422	Pfam	Leucine rich repeat	108	146	IPR001611	GO:0005515
	Lele56g1407	422	Pfam	Leucine rich repeat	229	288	IPR001611	GO:0005515
	Lele56g1407	422	PRINTS	Leucine-rich repeat signature	254	267	-	-
	Lele56g1407	422	PRINTS	Leucine-rich repeat signature	275	288	-	-
	Lele56g1407	422	PANTHER	LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN	13	410	-	-
	Lele56g1407	422	FunFam	Nuclear pore complex protein NUP107	30	200	-	-
	Lele56g1407	422	Coils	Coil	184	204	-	-
	Lele56g1407	422	SMART	LRR_typ_2	133	155	IPR003591	-
	Lele56g1407	422	SMART	LRR_typ_2	157	181	IPR003591	-
	Lele56g1407	422	SMART	LRR_typ_2	251	274	IPR003591	-
	Lele56g1407	422	SMART	LRR_typ_2	109	132	IPR003591	-
	Lele56g1407	422	SMART	LRR_typ_2	275	298	IPR003591	-
	Lele56g1407	422	SMART	LRR_typ_2	325	348	IPR003591	-
	Lele56g1407	422	Gene3D	Ribonuclease Inhibitor	202	422	IPR032675	-
	Lele56g1407	422	SUPERFAMILY	L domain-like	83	349	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele56g1407	Lele-ChrLele56	17126400	17127668	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele56g1407	50	422	Receptor kinase-like Gene Family	AT1G17750	32.242	7.26e-33	129

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele56g1407	56	17126400	17127668	Lele56g1407	56	17126400	17127668	ECH
	Lele55g1474	55	20875826	20877094	Lele56g1407	56	17126400	17127668	ECH
	Lele53g0020	53	202818	204086	Lele56g1407	56	17126400	17127668	hybridization
	Lele54g0019	54	224960	226228	Lele56g1407	56	17126400	17127668	hybridization